Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2259 ATGTGCGGTGGTCCAGAGAAATCAAAGTCTCTTTCAACTCCATCTTCATCTGCGGTAGAAGGTTCAACTAACGGCAAAGACATGAACAAATTAACAGTTCATGCTGCAGATTCTTTTTCCTGCTTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGTTAGGGATGTTTCTCTAATAAGTGAAGTTGGCCTCTGGTATGTTCGCCAGATTGGGTCCAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTATACTCTCATGTCCGGAGACTGATGTCAATTTCTCCTGCGGGACAGATAAAAGCACTGCCCTTCACTGTGCTGCATCGGGTGGTTCTGTTAATGCAGTTGATATTGTCAAATTGCTCTTATCAGCCGGTGCTGATATCAGTTGTGTGGATGCTAATGGAAATCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAAGGTCTGAAAGCAACCCTTGAAGATCTACTTTCAGATACTGCTTCTGATGGGTCTATTGGTGAGTGTTTTATTCCAATATCAGGTAATTCATCATGTTCTGATTCAGCTGCTCATTTATCACCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCATCAAAGTTTACTGATGCAGCTGTTAATTCTGTTTCTGACAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCAACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCACCCTGGAGAGAATGCTCGTAGGAGAGACCCCCGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAGGGGGCCTGTAGGCGTGGGGACATGTGTGAATATGCTCACGGAGTATTTGAGTGCTGGCTACACCCAGCTCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATATGTGTCCACTGGATCTGCTGTTCCCTCGCCTCGCTCATCTGCCTCTACTCCAAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTTGCCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCACAGCCAATGTCTCCATCCACAAGTGGCATTTCTCATTCATCTAATGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAATGACTTAGGCTGTTTCTCGCAGCCCCATCCTGGTGGCATTTCAGTGAGTCGATCTGGTCGGTCCAAGACACTAACTCCATCAAATCTTGATGAACTATTTTCTGCTGAGATTTCTTCATCTCCCCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCAACACACAAATCGGCTATTATGAATCAGTTTCAACAGCTTCAAAGTTCATTATCACCCATAAATACAAGTGTCTCGTCTCCTAGGAATGTTGAGCATCCTCTATTCCAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAGCCAATCTCTCCAATGAGCTCTCGATTATCATTTGCTCAGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAACATTCCTGTCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGCAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCACAGGTCATCATCGTTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCATCTGAGATAAAAGAGTTGGGAGGTTCTGGCCCTGTTGCATTTGCTGATGGACCGAGTTCAAATCCTCAAGTTGAGTCTGTTGATCATTCCGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2169 0.4472 MCGGPEKSKSLSTPSSSAVEGSTNGKDMNKLTVHAADSFSCLLELASNNDFEDFKLALVRDVSLISEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSIDVLKLILSCPETDVNFSCGTDKSTALHCAASGGSVNAVDIVKLLLSAGADISCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDTASDGSIGECFIPISGNSSCSDSAAHLSPPENGLPSSPMASKFTDAAVNSVSDKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGLPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDLDVLQDFDGQQHLLNDLGCFSQPHPGGISVSRSGRSKTLTPSNLDELFSAEISSSPRYSDPAVASVFSPTHKSAIMNQFQQLQSSLSPINTSVSSPRNVEHPLFQASFGVSSPGRMSPRSMEPISPMSSRLSFAQREKQHQQLRSLSSRDLGANIPVSMVGSPVNSWSNWGSPHGNGKVDWSVNGNELGRLHRSSSFELGNNGEEPDLSWVQSLVKESPSEIKELGGSGPVAFADGPSSNPQVESVDHSVLGAWLEQMQLDQLVV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2259 722 MobiDBLite consensus disorder prediction 8 24 - -
Gso15g2259 722 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Gso15g2259 722 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Gso15g2259 722 SUPERFAMILY Ankyrin repeat 39 164 IPR036770 -
Gso15g2259 722 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Gso15g2259 722 Gene3D - 17 166 IPR036770 -
Gso15g2259 722 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Gso15g2259 722 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Gso15g2259 722 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Gso15g2259 722 MobiDBLite consensus disorder prediction 1 24 - -
Gso15g2259 722 Gene3D - 297 360 - -
Gso15g2259 722 Pfam Ankyrin repeats (3 copies) 77 151 IPR002110 GO:0005515
Gso15g2259 722 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Gso15g2259 722 PANTHER UNKEMPT FAMILY MEMBER 22 720 IPR045234 -
Gso15g2259 722 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 22 720 - -
Gso15g2259 722 SMART ANK_2a 119 151 IPR002110 GO:0005515
Gso15g2259 722 SMART ANK_2a 84 114 IPR002110 GO:0005515
Gso15g2259 722 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Gso15g2259 722 MobiDBLite consensus disorder prediction 402 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2259 Gso-Chr15 51461770 51466082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2259 1 719 C2H2 Transcription Factor Family AT5G12850 54.217 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g2259 Ank_2 6.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2259 - - gmx:100792574 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g2331 11 39272185 39275878 Gso15g2259 15 51461770 51466082 PCT