Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2249 ATGACAGATCCTAAGTCCAATGTATACACTGAAACATTCAACTTCATGCCCCTCTATTCTCATCACTCTTCTTTTACTTCTCAATCAAGCCTACTCTCTTCTTACCCTCTTTCATATTCAAACACCAACACCAACACTTTTTCCAATCAATCGGATACCTCTTCTTCCTCTTGTGCAGCCCCTCCTCCTTCTTCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAAACAGAAGAAAAATGAACCCTCAAACGGTGGTGAAGAAGTTGAAGAGGAAGGACAAAAGAAAAGGGACATAGATGAGACCCTTTTGACTAGTATTACTGAAGAGGGTGATGATGATGAAACTGTGACAGTAGCACTGCAAATAGGCCTTCCTAGCGTGGCTACTTCTGATCTTAATGGATCAAGAAAGATCTTTGAAGCTTGTGCAAAAATGGATGTAAAGGAGGATGTGAGGGTTATTTCTGGACACCCGTTGGATAGATTGAACAACATTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTCATGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAACAAGGCCTCTCAAGGACTTCAGAACCCTTCAAACACACTACAAGAGAAAACACGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTCAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCATAACATGGTACTGTTTATGTGGGTCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGACCACGGTGTAGTTGACATTGATTGCATGCAAGAAGATGAAGCAGCCTCTGAAATTGAACATGATGGAGGATAG 1029 0.415 MTDPKSNVYTETFNFMPLYSHHSSFTSQSSLLSSYPLSYSNTNTNTFSNQSDTSSSSCAAPPPSSPLREALPLINNIKQKKNEPSNGGEEVEEEGQKKRDIDETLLTSITEEGDDDETVTVALQIGLPSVATSDLNGSRKIFEACAKMDVKEDVRVISGHPLDRLNNIQYWIPTPSQILIGPTQFLCHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRTRPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGITWYCLCGSDFKHKRSLKDHIKAFGHDHGVVDIDCMQEDEAASEIEHDGG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2249 342 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 340 - -
Gso15g2249 342 MobiDBLite consensus disorder prediction 46 62 - -
Gso15g2249 342 MobiDBLite consensus disorder prediction 83 102 - -
Gso15g2249 342 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Gso15g2249 342 MobiDBLite consensus disorder prediction 46 102 - -
Gso15g2249 342 PANTHER ZINC FINGER PROTEIN WIP2 1 340 IPR043584 GO:0003700|GO:0010468
Gso15g2249 342 SMART c2h2final6 269 289 IPR013087 -
Gso15g2249 342 SMART c2h2final6 295 318 IPR013087 -
Gso15g2249 342 SMART c2h2final6 185 207 IPR013087 -
Gso15g2249 342 Gene3D Classic Zinc Finger 248 323 - -
Gso15g2249 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Gso15g2249 342 SUPERFAMILY beta-beta-alpha zinc fingers 252 289 IPR036236 -
Gso15g2249 342 SUPERFAMILY beta-beta-alpha zinc fingers 179 207 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2249 Gso-Chr15 51243661 51246143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2249 1 338 C2H2 Transcription Factor Family AT3G57670 50.262 1.32e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso15g2249 zf-C2H2_6 6.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2249 - - gmx:100789060 634.409