Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2246 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAGGGGGATCAATGTGATTTTGCTCATGAGAAAAAGGATGATATTTGCAGCTATTATAAAAAAGGATCCTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCTCAAGCGTCATCTTCAGCAAATGGACGCCATTCTCCTGTTTTGGATCCTGTTGTGAATCATACCATTAAAGGAACATCAAGTTGGGTTCCAAAGGCTGTGAAGTCATCTTCATCGGACAAGCGTGCAAGGAGCTCACAACAAAAGAATCTGCCCTCTCTTGAAAATGATGTTGGTCAATCCAGTACTAGTAGTGTTATACCATCTGAACATTTGTTCTGTGCATTTGCTGCTGCCAACTGCCCCCTTGAAGATAAATGTTCTCGCATTCATGGAAATCAGTGCTTATACTGTAGAAAATTTTGCTTACATCCTACTGATCGAAAGGAAAAAGAAAACCATTTGAGAACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGATAGTCAAGAAGTAGAGTGCAATGTTTGTTTGGAACGTGTTCTGTCCAAACCTAAACCAGCTGATTGTAGGTTTGGTCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATCAGTAATGCTGGCACTGCTAATACAGTCAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAGCAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCATACAGTGAAGCCCGGCTCTTACACATGGATACATCACAGGCCACCACCTCAACGTAGACAGAACCATTTTGATGTGCATGACATGTTGAACATGCTCCAGGATGTTGACTTAACAAGTGCAGAATATTTTTCCATCATGAGGGACTCGGACCTTTATGATGATATGGATCCATTCGAGATGATGGTATCTGATAGGCTTGCTGGTGATTCAGGTCCTTGTTTAGGTCCTTTTGATTCTGATGAGGAGGACTTGGATATTTTTCAGATGGCTGCATTGTCAGAAGTGCTGGCTTCTGGTGTGGATGATTTTGGTCCCGAAGATTTCGGTGATGAAGATTTCAATCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATGGAAGATGAAGATGACGACGATGATGAAGAAGAATACAGTGATGAAGACTACTAG 1359 0.4113 MSNRVCKFYARGACLKGDQCDFAHEKKDDICSYYKKGSCAYGSRCRYKHVKASQASSSANGRHSPVLDPVVNHTIKGTSSWVPKAVKSSSSDKRARSSQQKNLPSLENDVGQSSTSSVIPSEHLFCAFAAANCPLEDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKEKYLQALKDSQEVECNVCLERVLSKPKPADCRFGLLPECDHAFCLSCIRNWRNSAPTSGMDISNAGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRQNHFDVHDMLNMLQDVDLTSAEYFSIMRDSDLYDDMDPFEMMVSDRLAGDSGPCLGPFDSDEEDLDIFQMAALSEVLASGVDDFGPEDFGDEDFNPMEAALLSMMMHSNMEDEDDDDDEEEYSDEDY* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2246 452 MobiDBLite consensus disorder prediction 82 114 - -
Gso15g2246 452 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Gso15g2246 452 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Gso15g2246 452 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Gso15g2246 452 Gene3D - 1 62 - -
Gso15g2246 452 MobiDBLite consensus disorder prediction 435 452 - -
Gso15g2246 452 MobiDBLite consensus disorder prediction 432 452 - -
Gso15g2246 452 SMART ring_2 188 250 IPR001841 -
Gso15g2246 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 256 IPR013083 -
Gso15g2246 452 ProSiteProfiles Zinc finger C3H1-type profile. 280 309 IPR000571 GO:0046872
Gso15g2246 452 ProSiteProfiles Zinc finger RING-type profile. 188 251 IPR001841 -
Gso15g2246 452 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Gso15g2246 452 Pfam RNA-binding, Nab2-type zinc finger 285 306 - -
Gso15g2246 452 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Gso15g2246 452 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 452 - -
Gso15g2246 452 Pfam Zinc finger, C3HC4 type (RING finger) 188 250 IPR018957 GO:0046872
Gso15g2246 452 SUPERFAMILY RING/U-box 178 257 - -
Gso15g2246 452 CDD RING-HC_MKRN 188 251 - -
Gso15g2246 452 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gso15g2246 452 SUPERFAMILY CCCH zinc finger 25 49 IPR036855 GO:0046872
Gso15g2246 452 PANTHER MAKORIN-RELATED 1 452 IPR045072 -
Gso15g2246 452 SMART c3hfinal6 280 308 IPR000571 GO:0046872
Gso15g2246 452 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Gso15g2246 452 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Gso15g2246 452 SMART c3hfinal6 27 51 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2246 Gso-Chr15 51212733 51218694 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g2246 zf-C3HC4 1.3e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2246 K15687 - gmx:100788886 912.909