Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2240 ATGGACAAGGGGGTGCCTCCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGATAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGGTGGTTCCAGTGGAAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAACGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGTGATATATGCAGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAATGCTCTTGTGCAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAATGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAAAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTATTGAGGCCGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCCGGTAATGTTAAGAAGAATAACTTGGGGGTTGGGGCTCAGGAACCTGGAGAGGTGAGTGCTGAGGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTGA 1236 0.4409 MDKGVPPSLFVNDGSFMERFKQLQQEQDKGKNVKLEDSKPIKGGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVVIYAAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEENALVQSRESQVPRNGGTSTSSSKQTNGHQRSSQQHTYQIPASALYESADNPRASGFSIQTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAIEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2240 411 MobiDBLite consensus disorder prediction 226 250 - -
Gso15g2240 411 ProSiteProfiles SURP motif repeat profile. 123 166 IPR000061 GO:0003723|GO:0006396
Gso15g2240 411 SUPERFAMILY Surp module (SWAP domain) 111 174 IPR035967 GO:0003723|GO:0006396
Gso15g2240 411 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 411 IPR040169 -
Gso15g2240 411 Pfam G-patch domain 329 372 IPR000467 GO:0003676
Gso15g2240 411 MobiDBLite consensus disorder prediction 225 250 - -
Gso15g2240 411 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 411 - -
Gso15g2240 411 SMART G-patch_5 326 373 IPR000467 GO:0003676
Gso15g2240 411 MobiDBLite consensus disorder prediction 177 212 - -
Gso15g2240 411 ProSiteProfiles G-patch domain profile. 328 375 IPR000467 GO:0003676
Gso15g2240 411 MobiDBLite consensus disorder prediction 23 38 - -
Gso15g2240 411 Pfam Surp module 122 172 IPR000061 GO:0003723|GO:0006396
Gso15g2240 411 MobiDBLite consensus disorder prediction 23 99 - -
Gso15g2240 411 Gene3D Surp module 109 177 IPR035967 GO:0003723|GO:0006396
Gso15g2240 411 SMART surpneu2 121 175 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2240 Gso-Chr15 51067183 51074071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2240 302 384 C2H2 Transcription Factor Family AT5G26610 39.773 4.36e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2240 K13096 - gmx:100786213 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1275 8 11834851 11841844 Gso15g2240 15 51067183 51074071 GST