Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2233 ATGGGGAAGTTATCAATCAAATTGCACGATAAGTGCAAGAACCGCAAGGAATCATCATCATGGCCATTAACAAAGTGTTTTCAGCATGGTAGTGGAAGAGATGATGCAATTGGAATTACACAAGAATGGGGTATTGACTTTTCTAATCTCTTCATTGGGCACAAGTTTTCTCAAGGTGCTCATAGTCAAATTTACCATGGTATATACAAAAAGGAACATGCTGCTGTTAAATTCGTCAAGGTTCGATATAATGATCAAAAGGGAATCCCAAAATCCCTTTTAGAGGCTCAATTTTTAAGAGAAGTCACACATCTACCTCGTCTCCACCATCAAAATGTTGTGAAGTTCATAGGCGCACACAAAGACACTGATTTTTATTGCATTCTCACGGAGTATCAGCAAAAGGGATCTTTAAGGGTGTATTTGAACAACTTAGAGTCCAAGCCAATTTCTCTGAAGAGGGTGATAGATTTTGCTTTGGATATTGCTCGTGGAATGGAGTATATACATGCACAAGGGATCATTCATAGAGACCTTAAACCGGAGAATGTACTTGTTGATGGGGAAATTCGCCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGCTTCGAAGTGTGACTCCTTGAGGGGTACGTACCGTTGGATGGCGCCAGAGATGATCAAAGGCAAACGCTATGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTGTGGGAGTTGGTGAGTGGAACAGTACCATTTGAGGGCTTGAGTCCAATCCAGGTTGCTGTTGCTGTTGCAGATAGGAATTCAAGGCCAATTATTCCTTCACATTGCCCACATGTTTTGAGTGGTTTGATAAAGCAGTGTTGGGAATTGAAACCAGAGAAGAGGCCTGAGTTCTGCCAGATTGTTCGAGTTTTGGAGCAATTAGATCAAGGCTGCAGCTTCTTGCCCCCCAAGAAACTCAAGCAACACCCTCTTTCATTACGAAAATGGTAA 987 0.4184 MGKLSIKLHDKCKNRKESSSWPLTKCFQHGSGRDDAIGITQEWGIDFSNLFIGHKFSQGAHSQIYHGIYKKEHAAVKFVKVRYNDQKGIPKSLLEAQFLREVTHLPRLHHQNVVKFIGAHKDTDFYCILTEYQQKGSLRVYLNNLESKPISLKRVIDFALDIARGMEYIHAQGIIHRDLKPENVLVDGEIRLKIADFGIACEASKCDSLRGTYRWMAPEMIKGKRYGRKVDVYSFGLILWELVSGTVPFEGLSPIQVAVAVADRNSRPIIPSHCPHVLSGLIKQCWELKPEKRPEFCQIVRVLEQLDQGCSFLPPKKLKQHPLSLRKW* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2233 328 ProSiteProfiles Protein kinase domain profile. 50 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g2233 328 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 PRINTS Tyrosine kinase catalytic domain signature 211 221 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 PRINTS Tyrosine kinase catalytic domain signature 230 252 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 PRINTS Tyrosine kinase catalytic domain signature 274 296 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 SMART serkin_6 50 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g2233 328 PANTHER SERINE-THREONINE PROTEIN KINASE 11 308 - -
Gso15g2233 328 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 308 - -
Gso15g2233 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gso15g2233 328 Gene3D Phosphorylase Kinase; domain 1 39 134 - -
Gso15g2233 328 Gene3D Transferase(Phosphotransferase) domain 1 135 320 - -
Gso15g2233 328 Pfam Protein tyrosine and serine/threonine kinase 52 303 IPR001245 GO:0004672|GO:0006468
Gso15g2233 328 SUPERFAMILY Protein kinase-like (PK-like) 37 303 IPR011009 -
Gso15g2233 328 CDD STKc_MAP3K-like 58 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2233 Gso-Chr15 50983691 50984861 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2233 5 306 MAP Kinase Kinase Kinase AT5G58950 52.787 1.55e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso15g2233 PK_Tyr_Ser-Thr 8.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2233 - - gmx:100784279 677.937