LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g2227	ATGTGGAGATTTAAGCCATTCAGTCACAAAGAACAGACTGGTCTTGAAGGCCGCACTATAGATGTTAGCAATCTTAAAATAAATATCATTAAGGCCATTGCCGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGAGATGCTGTACACATGTCAAAGCAATATGCTTTGAAGCACATGATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGCAGGACATCCCAATGTTGTCACACTTCATGCACATGCCATCGTTGATATGGGTAGGACGAAAGAAGCATTCGTTGTGATGGAATTTTGTGAGAGGTCTCTGGTTAATGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTGATCTTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCCGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGGGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAATTACCAAAATACACTTCACCTGTCACGGACTTGATAAGAGAAATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGGTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACTTCACCACAACCACCCCCTGCTTCTAGGGGAGGGGGAAGTGGGGGTGCACTTGGTGCTTTCTGGTCCACTCAGCATGCAAAGGAATCACTTGTTGCTGAGGATAAGAGTAAACCAATTTTTGATGAAGAACCATCTAGCCACCATATTTCACCGAAACATGATAGGATTCTTCCTGAAAACGAACAGTTACCCAAAAATGTTGGTCCTAACAAAGTGGTTAACACACAAACTCATACCGTGAAAAGCAGTACACATGGAAAATTACACAAGCCTGATACTGTACCCTCCAAGGATTTTGAAATAAATTTGTTTAAGGATAAAGATCGCGTACGTGAGAGTACAACTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTTGATACTACTAAGCTCAACTCTGGACTTAGTAACAAACCCGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTGGAAAAAGCTGAAATAACATCAAAGTATGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAACTGCAGGATCTGAAGCAAGCACTCACAGCTAGGACTCCTTCGCCAAGTAGAGATGGTTTGAAAACCTCTCCTGCAGTTACATCATCTGCATCTGCATCTGCATCTGCGAATAAGTCATGGCATGCTTTTCCAGAGGAACCTCAACAACAAAAGTCCTTCTCAGCCGAAAATACCTCCAAATCCGTCAGGGTGAAAAATGGTCAGCAGAACAAGCAACCTGTTGCACTAGCTACTGATTTTGATTCATGGGGTTTTGGATCAGATAGCTTCAGTGCTGTACCTGCTGGCAGCCCACACATGCAAAGACCTAGCAGTGCAGGAACAAAGTCTCAGGCTTTTGGTGAGGCAAACAAGTCAACTTCTCAACCAGCTGGATGGGCTGGTTTTTAA	1989	0.4394	MWRFKPFSHKEQTGLEGRTIDVSNLKINIIKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKMLAGHPNVVTLHAHAIVDMGRTKEAFVVMEFCERSLVNVLESRGAGYFDEKQVLLIFRDVCNAVLAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPELPKYTSPVTDLIREMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSSNNHEGVSMPSNRSPPMPRRNPPPPPSSGEPKTSPQPPPASRGGGSGGALGAFWSTQHAKESLVAEDKSKPIFDEEPSSHHISPKHDRILPENEQLPKNVGPNKVVNTQTHTVKSSTHGKLHKPDTVPSKDFEINLFKDKDRVRESTTNFQNQAFNTFVAEFDTTKLNSGLSNKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALTARTPSPSRDGLKTSPAVTSSASASASANKSWHAFPEEPQQQKSFSAENTSKSVRVKNGQQNKQPVALATDFDSWGFGSDSFSAVPAGSPHMQRPSSAGTKSQAFGEANKSTSQPAGWAGF*	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	541	608	-	-
	Gso15g2227	662	CDD	STKc_GAK_like	26	298	-	-
	Gso15g2227	662	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	565	-	-
	Gso15g2227	662	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	563	655	-	-
	Gso15g2227	662	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso15g2227	662	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	301	366	-	-
	Gso15g2227	662	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	565	-	-
	Gso15g2227	662	PANTHER	SERINE/THREONINE PROTEIN KINASE	563	655	-	-
	Gso15g2227	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	329	352	-	-
	Gso15g2227	662	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	301	324	-	-
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	620	662	-	-
	Gso15g2227	662	Coils	Coil	485	540	-	-
	Gso15g2227	662	SUPERFAMILY	Protein kinase-like (PK-like)	27	343	IPR011009	-
	Gso15g2227	662	Gene3D	Transferase(Phosphotransferase) domain 1	10	306	-	-
	Gso15g2227	662	MobiDBLite	consensus disorder prediction	634	662	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g2227	Gso-Chr15	50842371	50846910	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g2227	26	292	Miscellaneous Gene Families	AT2G34180	30.108	1.25e-20	94.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Gso15g2227		Pkinase	2.7e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g2227	K08853		-	gmx:100780879	1241.87