Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2219 ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGTTTCATGGAAAAGCCTCGCGAAGCCTCCAACCAACTTGGTTTAGGCTTCAACACAACGTTATCAATTGGTCCAATCATTACTAGACATAAAGATCATCAACAAGATGAAGATGAAGAATACCAAGAAGAAGAAGAAGAAGAAACAAAGCCAAAGAACAACAACACTCACAGAATACAAGGTCCTGATGGCCTTTCTTCCAATCCCAACAACAACAACAATACAGTTCTGCATCAACTTGATCTTCTCCCTCAACTCGCTCTCCCATGGCACCCTCCTTCTGAAAACGGAAGTTTATCATCTGAGTTGGGAGGCTCTTCTCGGGGCTTGGACGTGAACGCGCAGCCGCCGGCGGTGGAGGACGAGGCGGAGGAAGCGGCGGCGCTGTCGTCGTCTCCGAACAGCGCCGCCTCATCATTTCAAATGGATCTCTGCATATACAGCAGCAGAGGAGGGAGCTCCTATAAGAGGGACTTTGAGGGTGAGGCTTATGATCAAAGGACCTCTTCAAGGGCCAGTGACGATGACGACAATAATAATGGTAGTGGTGGTAATACTAGGAAGAAACTCAGACTCTCCAAAGAACAATCTGCATTCCTTGAAGAGAGTTTCAAGGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCAACCTCGTCAAGTAGAAGTCTGGTTCCAGAATCGTCGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACAGAAGAGAATAGAAGACTTCACAAGGAGCTTCAGGAATTGAGGGCTTTGAAGACTTCAAACCCCTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAGCGCGTGGCCACAAATTCTACATCCACTTCCTTATCTATTAGTGCCACCATCAATGCTACAAATTCAGGAGCCATGGCCAGTGTCAAAACAAGTAATAACAATAACAACAATGACTCACCCTCCAAAGCCATTGGATTCCCCTTTGGAAAACCGAGGTTTCACCCATTTGTTCACACTAGCCAACAACCCCATCAACACCAATCCACAGCATCTTGA 1155 0.4571 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFNTTLSIGPIITRHKDHQQDEDEEYQEEEEEETKPKNNNTHRIQGPDGLSSNPNNNNNTVLHQLDLLPQLALPWHPPSENGSLSSELGGSSRGLDVNAQPPAVEDEAEEAAALSSSPNSAASSFQMDLCIYSSRGGSSYKRDFEGEAYDQRTSSRASDDDDNNNGSGGNTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSLSISATINATNSGAMASVKTSNNNNNNDSPSKAIGFPFGKPRFHPFVHTSQQPHQHQSTAS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2219 384 Coils Coil 271 294 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 109 123 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 341 384 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 171 206 - -
Gso15g2219 384 CDD homeodomain 202 259 IPR001356 GO:0003677
Gso15g2219 384 Pfam Homeodomain 202 256 IPR001356 GO:0003677
Gso15g2219 384 MobiDBLite consensus disorder prediction 171 189 - -
Gso15g2219 384 SMART HOX_1 200 262 IPR001356 GO:0003677
Gso15g2219 384 SUPERFAMILY Homeodomain-like 187 259 IPR009057 -
Gso15g2219 384 Pfam Homeobox associated leucine zipper 258 292 IPR003106 GO:0006355|GO:0043565
Gso15g2219 384 MobiDBLite consensus disorder prediction 70 90 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 44 90 - -
Gso15g2219 384 PANTHER - 89 377 - -
Gso15g2219 384 PANTHER PROTEIN, PUTATIVE-RELATED 89 377 - -
Gso15g2219 384 ProSiteProfiles 'Homeobox' domain profile. 198 258 IPR001356 GO:0003677
Gso15g2219 384 Gene3D - 206 256 - -
Gso15g2219 384 SMART halz 258 301 IPR003106 GO:0006355|GO:0043565
Gso15g2219 384 CDD bZIP 251 290 - -
Gso15g2219 384 Coils Coil 42 62 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 341 355 - -
Gso15g2219 384 MobiDBLite consensus disorder prediction 103 150 - -
Gso15g2219 384 ProSitePatterns 'Homeobox' domain signature. 233 256 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2219 Gso-Chr15 50741095 50743717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2219 123 314 Homeobox Transcription Factor Family AT3G60390 59.091 5.62e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso15g2219 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2219 K09338 - gmx:100778742 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1246 8 11493339 11495851 Gso15g2219 15 50741095 50743717 GST