Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2218 ATGGAGCATTTGGGCCAAATAGAAGAGCGTATTAGATGCCTAGAAGCAGTAGTTTTCAGGGCTAGGCAGCGTCAGAGGTGGCGACCGAGTCAGGCTCCAATTCGGATAACTAACTATGCAGGAGAATCGGTAACAGTAGCTGACCTTCAAGCTGAAGAAGACAGGGTGCATCAAGAGTTTGGTGGTGTTGATGTTGGAGGCGAGATGATGGGAAGTGGGAGAATGGGTAAAAGGAAAGCTAGCTATTTGGTTGCTAAAGCATTGGGTGTGGAAACCAATCAGGGTGAGGGTTTTGCAACAAATTTGTTTCATTGTAATATATGCTTGGACAAGGCAAGAGATCCAGTTTTGACTTCTTGTGGTCACTTGTTTTGCTGGCCATGCTTTCATAAGTTGTCATATGCTTATTCAAATGTGAGGGAATGTCCGGTTTGTAAAGGAGATGTCACTGAAGAAGGAATTATCCCAATTTATGGCAATGCAAGTGTTGATAACAATGGCAAGTTTGAATCGAATGAAATTGGTTTGACAGTTCCTGCTCGACCTCGTCCACATAGAATTGAGAGTATTAGGCAGCGGTTCAGATACTGA 591 0.4365 MEHLGQIEERIRCLEAVVFRARQRQRWRPSQAPIRITNYAGESVTVADLQAEEDRVHQEFGGVDVGGEMMGSGRMGKRKASYLVAKALGVETNQGEGFATNLFHCNICLDKARDPVLTSCGHLFCWPCFHKLSYAYSNVRECPVCKGDVTEEGIIPIYGNASVDNNGKFESNEIGLTVPARPRPHRIESIRQRFRY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2218 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 159 IPR013083 -
Gso15g2218 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso15g2218 196 SUPERFAMILY RING/U-box 100 161 - -
Gso15g2218 196 CDD RING-HC_AtRMA_like 103 147 - -
Gso15g2218 196 Pfam Zinc finger, C3HC4 type (RING finger) 104 150 - -
Gso15g2218 196 SMART ring_2 105 145 IPR001841 -
Gso15g2218 196 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 194 - -
Gso15g2218 196 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2218 Gso-Chr15 50711321 50712999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2218 34 195 C3H Transcription Factor Family AT3G58030 36.364 7.28e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2218 K10666 - gmx:100778919 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1304 8 12245412 12247626 Gso15g2218 15 50711321 50712999 GST