Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2207 ATGGCGGCGACGGCGACGGCGACGGCGGAAGCGAAAACCTACTGGTGCCACGAGTGCGACATGAGCGTGTCCCTGACTCTCCCACCCTCCCCTCTCCTCTGCCCTCACTGCCACACCCACTTCCTTGAACTCATGGACTCCCCAAGCCTCTCCCAAGAAAACGACGCCGAATCATCCCTCTTCGATGTCGTTTTTCAAGACGCACTCTTACTCCTCAACCCTAACCCTAACCCTAACCCTAAGCCACTTCCCTCCAAACCCCTTCCCCTCCCCTCCCTCCACGTCACCCCCTCCCTCCTCTCCTCCCTCGACCCCAACGGCGTCGTTCTCTGCGCCGTCTGCAAAGACCAAATTACCCTCAACGCCCAAGCCAAACAATTGCCCTGCCAACACCTCTACCACTCCGATTGCATCACGCCGTGGATAGAACTCAACTCGTCGTGTCCGCTATGCAGGTTTCGGTTGGAGGAAGAAGAGGAGGAAGGTGGTGACGCCGACGCTGACGCCGACGCCGTTATGACGGAGATCAGGAGGGAGATCATTGCGAGGCTGACGGAGCTGACGGAGGAGGATTTCTACGGGCTCAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACCAGAATCATCGCGCGCAGATTGGCGAGCCTCGCGGCGGCGGCGGTGGAGGTGGCGGCGATTCGGCTTGCTGA 708 0.6045 MAATATATAEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPSLSQENDAESSLFDVVFQDALLLLNPNPNPNPKPLPSKPLPLPSLHVTPSLLSSLDPNGVVLCAVCKDQITLNAQAKQLPCQHLYHSDCITPWIELNSSCPLCRFRLEEEEEEGGDADADADAVMTEIRREIIARLTELTEEDFYGLRTTLSHIASRHALIEENQNHRAQIGEPRGGGGGGGGDSAC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2207 235 Pfam zinc-ribbon 13 45 IPR039525 GO:0061630
Gso15g2207 235 MobiDBLite consensus disorder prediction 213 235 - -
Gso15g2207 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 169 IPR013083 -
Gso15g2207 235 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
Gso15g2207 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 12 207 - -
Gso15g2207 235 SMART ring_2 111 151 IPR001841 -
Gso15g2207 235 Pfam Ring finger domain 111 152 IPR001841 -
Gso15g2207 235 SUPERFAMILY RING/U-box 105 156 - -
Gso15g2207 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2207 Gso-Chr15 50592913 50595725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2207 10 195 C3H Transcription Factor Family AT3G60080 32.245 1.79e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2207 K11982 - gmx:100775530 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1313 8 12358713 12361295 Gso15g2207 15 50592913 50595725 GST