Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2190 ATGATGCCAGGCAATGGACAGTTAACTGTTCCTCCGGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTATCTGAGGAAGAAAGTTTCTTATGAAGTCATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAGTGTAGGATTGGATCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCATAAGGACAAGAAATACCCAACAGGAACCAGAACAAATCGAGCAACTACAGCTGGTTTTTGGAAAGCAACTGGAAGAGACAAGTCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAAGAAGATGGGTGGGTGGTATGCAGGGTCTTCAAAAAGAAAAACCAAAGCCGAGGTTTCCAACAAGAACTTGAAGAAGAAGAGCACTTAACCACCCACATGAGAGCAAGTGGTCCATGCCAGGTTCTAGAGCAGAAGCATCTTCACATGCAAGGAGGACCATATGATCATTACAACTTTGATGGGACAATGCACCTCCCACAGTTGTTCAGTCCAGAATCAGCTATTGCACCACCTACAAATTCTTCCTTGGCCTTATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACCTGTTGAGGCTCACAACCACTGGCTGTGGACTTAATCTTATGCAGCAACAACAAGAAGAGAGGTTCAGTGGTGACTGGTCTTTCTTGGACAAGCTACTAGCATCACACCATGGCATGGATCAAAGCAAATGTAACCCTCCTACTAATCATCATGCTGCAACTGCTGTGGGCACTTCTGCTCAAAAATTCCCATTTCATTACCTTGGCTGTGACACCACCCATGATATCATGAAATTTTCCAAGTAG 981 0.4455 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEVIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQSRGFQQELEEEEHLTTHMRASGPCQVLEQKHLHMQGGPYDHYNFDGTMHLPQLFSPESAIAPPTNSSLALSMNAMDILECSQNLLRLTTTGCGLNLMQQQQEERFSGDWSFLDKLLASHHGMDQSKCNPPTNHHAATAVGTSAQKFPFHYLGCDTTHDIMKFSK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2190 326 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Gso15g2190 326 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Gso15g2190 326 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 311 - -
Gso15g2190 326 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Gso15g2190 326 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Gso15g2190 326 PANTHER PROTEIN SOMBRERO 6 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2190 Gso-Chr15 50379217 50382974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2190 2 326 NAC Transcription Factor Family AT1G79580 52.910 8.90e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g2190 NAM 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2190 - - gmx:100815632 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1335 8 12600737 12604398 Gso15g2190 15 50379217 50382974 GST