Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2184 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTCAAGTGTATGAGCCAGGTGGAACCCCATCATGGTTCCCTAACCGTCTCTGGCATAGGTTTACAAACTGAAACTGAACCCAGAAACAGAAGCAAAACAAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATCGCAAGAGCAAAGGAAAGCCCTTAGGCATTAATGAGAAGAAGAAGAAAGCTTTTAGGGTTGTAGAGAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAGAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCGTGCCGACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACATTGGCTTATCTGCTTCCTATACTTACAGTTGTTGGGCCGCTGAGGGGGAAAACTCCTGAAGGCAACAGTGATGGTGGGGAGAGTGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCAAACCGAACCAGGCAGGAAGATGCTCTCAAGAAAAATAAGCCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCTGAGCTCAGTGCATCCGGGAAACTTCGCACTCATGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAACTGTTGTCATTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCAGACCCAAACTCAGATTCTAGAAAGGCCGAACGTCAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTATGATCCACTTCTTGTCCAAGCAAACAAAGTTGCACCACTTGAAACTGTCTCTCCCTCTGAACCCATCAGTTTGTCTCGGTCTTCACCCAGCTCAAGCCCTAGCTCGGCTATGCCATCTCCGGCAGCAGTAGAGAGTCTACCTCCTGCATTGAAACACTATTACTTTGTAACTAGGGTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCCATGGAGTTACATGGGGATCTTGGGAAGCTAGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTTACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTAGACTTACCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTAGGTAGGAATGGTACAGTGGTAACCATATGTGAAGAGTCAGAAGTGTTTGTTGTAAAGAAATTGCAGAAGCAGCTAGCAATACCAATTGCAGCCTGTGATTTTGCAGAGGGGAAGTTTCTCGTCACTGAGGAAGAGAAAACAGTAAGCACTTCTCAAAGATGA 1689 0.4612 MPTLISSRFLLLVGESLHMRRALATSRSVLLHTSVKCMSQVEPHHGSLTVSGIGLQTETEPRNRSKTNKVKPLGSPSENRKSKGKPLGINEKKKKAFRVVEKQQIESAPFAAESFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILTVVGPLRGKTPEGNSDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPNSDSRKAERQLIMVSATVPFSVVRAARSWGYDPLLVQANKVAPLETVSPSEPISLSRSSPSSSPSSAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLAIPIAACDFAEGKFLVTEEEKTVSTSQR* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2184 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 530 IPR027417 -
Gso15g2184 562 SMART helicmild6 429 510 IPR001650 -
Gso15g2184 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 551 - -
Gso15g2184 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Gso15g2184 562 MobiDBLite consensus disorder prediction 358 379 - -
Gso15g2184 562 CDD DEADc 124 346 - -
Gso15g2184 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Gso15g2184 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 551 - -
Gso15g2184 562 Pfam Helicase conserved C-terminal domain 407 510 IPR001650 -
Gso15g2184 562 MobiDBLite consensus disorder prediction 47 88 - -
Gso15g2184 562 Gene3D - 387 547 IPR027417 -
Gso15g2184 562 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Gso15g2184 562 SMART ultradead3 132 356 IPR014001 -
Gso15g2184 562 MobiDBLite consensus disorder prediction 47 61 - -
Gso15g2184 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Gso15g2184 562 MobiDBLite consensus disorder prediction 356 382 - -
Gso15g2184 562 CDD SF2_C_DEAD 390 519 - -
Gso15g2184 562 Gene3D - 78 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2184 Gso-Chr15 50215148 50217423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2184 114 538 Eukaryotic Initiation Factors Gene Family AT3G19760 23.709 5.61e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2184 - - gmx:100812968 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1341 8 12682842 12685095 Gso15g2184 15 50215148 50217423 GST