Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2173 ATGGGACACCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGGTTATGGTCTCCTGAAGAAGATGAGAAACTTCTCAGATATATCAACACACATGGGCAGAAAAGTTGGAGTTCTGTGCCAAAATTTGCAGGCTTGCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATTATTGACATTCATAGAATTCTTGGAAACAGATGGGCACAAATAGCCAAGCACCTACCAGGAAGAACAGACAATGAGATCAAGAATTTCTGGAACTCCTGCATAAAAAAGAAGCTCATTTCACAAGGGTTAGATCCACAAACCCACACTCTCCTTTCTTCTCATAGGAGAAGCTCAGTATGTACCATCTCCAACATCCATCAAAATTCCAATTCCATTTTCATTATGAGTTCGCACATACCAAATGCACCCTTGGAAAATACTAGTAAAACCTTTTCTACTTTACCTAAACCTCCAGCAAACATTGTTCAAATCCCCTCTGTCGTTGTTTCCTCAGAATTTCAAACAACAACTTCAAATAATGGAGAACCCCGCCAACATTTGCCTTATGAACTATTAATGGAGAACGCCATCACCAACATTTGTTCACCTACATACATGAACCCCTCGGCAGTTGAATTGTTTAACAATGACAACAATGTGAATTGGGTTTCTACAGTTAATGTTGAAGACTTCAGTGCTCAAACATTGGAAGAGGGAACGCAAGTGCAGGTGCAGCATGAGAAGGACAAGACTTGTGAGGATATGGGAATTGATGTGAGAGAAGCTAACAAGGGCAATATTGAAACTAGTGCTTCTTTTGAGAGTTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTACCTCTGAATTCATCTCTTATGATTTCAATTGTATGGATGAACTTGCATGGAACTTTTAG 972 0.4033 MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEIKNFWNSCIKKKLISQGLDPQTHTLLSSHRRSSVCTISNIHQNSNSIFIMSSHIPNAPLENTSKTFSTLPKPPANIVQIPSVVVSSEFQTTTSNNGEPRQHLPYELLMENAITNICSPTYMNPSAVELFNNDNNVNWVSTVNVEDFSAQTLEEGTQVQVQHEKDKTCEDMGIDVREANKGNIETSASFESSNFDFGLLESVLTSEFISYDFNCMDELAWNF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2173 323 CDD SANT 68 108 IPR001005 -
Gso15g2173 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso15g2173 323 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso15g2173 323 PANTHER MYB DOMAIN PROTEIN 55 1 311 - -
Gso15g2173 323 Gene3D - 68 115 - -
Gso15g2173 323 CDD SANT 16 60 IPR001005 -
Gso15g2173 323 SMART sant 12 62 IPR001005 -
Gso15g2173 323 SMART sant 65 113 IPR001005 -
Gso15g2173 323 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso15g2173 323 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Gso15g2173 323 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso15g2173 323 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso15g2173 323 PANTHER BNAC05G40480D PROTEIN 1 311 - -
Gso15g2173 323 Gene3D - 10 66 - -
Gso15g2173 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2173 Gso-Chr15 49961565 49963339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2173 1 323 MYB Transcription Factor Family AT3G12720 47.077 9.26e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g2173 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2173 K09422 - gmx:100811532 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1352 8 12890890 12892859 Gso15g2173 15 49961565 49963339 GST