LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g2168	ATGGCAGCATTGAACCTTTGCCGCATGGCACTTCGATCCTCGAAGCTTCTCTCTCGCCCTTATCATCGTCTTTCTGTTCAGTTGCAGATGCAGATGCAGCCCTCTTCTCCTTCACTCACTCGAAAGATGAGCATGGATGCACAGAGTGTTGCTTCTCAGCTTAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTGTTGGAGGGAAATGGAGTGATGCTTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATGGATCATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAGATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACCGCTTTAGCTGCAGCGGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAGTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTACGTGATACTGTTCAGAATATGAAAGTTGGGGATGGTTTCAGTGAAGGTGTGGCACAGGGTCCTCTAATCAATGAAGCTGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACTTTTTATGAACCCACGGTCATCAGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTAGAATATGGACTTGTGGGTGTTAACGAAGGAGTAATTTCAACTGAGGTGGCTCCATTCGGTGGTTTTAAACAGTCCGGCCTCGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGATCAAGTATGTTTGCTTGGGAAACATGCACAAAGCTTGA	1614	0.4411	MAALNLCRMALRSSKLLSRPYHRLSVQLQMQMQPSSPSLTRKMSMDAQSVASQLNSSGLLRTQGLVGGKWSDAYDGKTIKVYNPATGESIVDVACMGGRETNDAISAAYDAYGSWSKTTAAERSKFLRKWYDLLMVHKEELAQLITLEQGKPLKESVGEINYGAGFIEFAAEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDTVQNMKVGDGFSEGVAQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVNSDMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYIFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMHKA*	538

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g2168	537	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	57	534	-	-
	Gso15g2168	537	CDD	ALDH_F5_SSADH_GabD	81	531	-	-
	Gso15g2168	537	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	333	344	IPR016160	GO:0016491
	Gso15g2168	537	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	309	498	IPR016163	GO:0016620
	Gso15g2168	537	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	305	312	IPR029510	GO:0016491
	Gso15g2168	537	TIGRFAM	SSADH: succinate-semialdehyde dehydrogenase	81	527	IPR010102	GO:0009013\|GO:0009450
	Gso15g2168	537	Pfam	Aldehyde dehydrogenase family	72	529	IPR015590	GO:0016491
	Gso15g2168	537	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	57	534	-	-
	Gso15g2168	537	SUPERFAMILY	ALDH-like	58	533	IPR016161	GO:0016491
	Gso15g2168	537	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	76	523	IPR016162	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g2168	Gso-Chr15	49821330	49839039	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g2168	38	536	Aldehyde Dehydrogenase Gene Family	AT1G79440	80.160	0.0	823

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g2168	K17761		-	gmx:100808318	1023.46

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