Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2168 ATGGCAGCATTGAACCTTTGCCGCATGGCACTTCGATCCTCGAAGCTTCTCTCTCGCCCTTATCATCGTCTTTCTGTTCAGTTGCAGATGCAGATGCAGCCCTCTTCTCCTTCACTCACTCGAAAGATGAGCATGGATGCACAGAGTGTTGCTTCTCAGCTTAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTGTTGGAGGGAAATGGAGTGATGCTTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATGGATCATGGAGCAAAACCACTGCCGCTGAACGAAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAGATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACCGCTTTAGCTGCAGCGGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAGTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTACGTGATACTGTTCAGAATATGAAAGTTGGGGATGGTTTCAGTGAAGGTGTGGCACAGGGTCCTCTAATCAATGAAGCTGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACTTTTTATGAACCCACGGTCATCAGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTAGAATATGGACTTGTGGGTGTTAACGAAGGAGTAATTTCAACTGAGGTGGCTCCATTCGGTGGTTTTAAACAGTCCGGCCTCGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGATCAAGTATGTTTGCTTGGGAAACATGCACAAAGCTTGA 1614 0.4411 MAALNLCRMALRSSKLLSRPYHRLSVQLQMQMQPSSPSLTRKMSMDAQSVASQLNSSGLLRTQGLVGGKWSDAYDGKTIKVYNPATGESIVDVACMGGRETNDAISAAYDAYGSWSKTTAAERSKFLRKWYDLLMVHKEELAQLITLEQGKPLKESVGEINYGAGFIEFAAEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDTVQNMKVGDGFSEGVAQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVNSDMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYIFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMHKA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2168 537 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 57 534 - -
Gso15g2168 537 CDD ALDH_F5_SSADH_GabD 81 531 - -
Gso15g2168 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Gso15g2168 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
Gso15g2168 537 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Gso15g2168 537 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 81 527 IPR010102 GO:0009013|GO:0009450
Gso15g2168 537 Pfam Aldehyde dehydrogenase family 72 529 IPR015590 GO:0016491
Gso15g2168 537 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 57 534 - -
Gso15g2168 537 SUPERFAMILY ALDH-like 58 533 IPR016161 GO:0016491
Gso15g2168 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 523 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2168 Gso-Chr15 49821330 49839039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2168 38 536 Aldehyde Dehydrogenase Gene Family AT1G79440 80.160 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2168 K17761 - gmx:100808318 1023.46