Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2154 ATGGACCAATCACAACTCTTACATGACCCAAATTTCCCTCTCTTCAAAACCCCTCGCAAAACCCCTTCTTCACCCGCCGTAACCACCACCGCCACTAACAAACCCCCTTCAACCGCCGCAAACCCCACCTCCAACGGCGAGCGCATCGAAGACCACCCCGACGAAACCGCCACCGACACCGATGCCGACGCCGAGACGTTCGGCGACCTTGGGCTCGCGGAATGGGCGGTGAAGACGTGCCGGGAGCTCGGGATGCGGAGGCCGCGGGGCGTGCAGCGGCGGTGCATCCCGCGCGTGCTGGAGGGCCGGCACGTGCTTGGCGTCGATGAGACCGGGAGCGGGAAGACGGCGGCCTTCGCGCTCCCGATCCTGCACCGCCTCGCTGAGCACCCGTTCGGCGTCTTCGCCCTCGTCGTGACCCCCACGCGCGAGCTCGCCTTCCAGCTCGCCGAGCAGTTCCGCGCCCTCGGCTCCGCCGTGCACCTCCGCATCACGGTGGTCGTCGGGGGCATGGACATGCTCAGGCAGGCCAAGGAGCTCGCCGCGAGGCCGCACCTTGTCATCGCCACCCCGGGGAGGATCCACGCCCTGCTCCGCAATAACCCTGATATTCCTCCCGTTTTCTCCAGAACCAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAGATTTATCTTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGCAAAAGTTGCGTGGGCGTTACCAAGATAAGATGTATGTCTATGAGGCTTATGAAGGCTTTAAAACAGTTGAAACACTTAAGCAACAGGCTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGGATAAAATGGAAGATATGGGAATTCGGTCTGCCATCGTATTTATCTCAACATGCAGAGATTGTCATCGTTTGAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTATATTCATTCAAATCACAAGCTCAGAGGCTTGAAGCACTTCATCAATTTAAATCGGGAAAGGTTTCTATACTTCTTGCAACTGATGTTGCCAGCCGTGGTTTGGATATTCGTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTAGGCCGTACAGCAAGAGCTGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCATGAAATTGAAGCACTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAATGACGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAGCTGAAAATGCTAGAAGAGAAAGGATTGTTAACTAAAAGAAGTAAAAAGAGAAAACGAAATAAAGAATTTGCAGAGGAAGGGAAAGAACAAAAGAAAGAGGTTTTAACTGCTAGGAATGTGGCAGAAATGAAGATGATGGATGAAGGTGGCATTGAGGAGAAAGCAGAAGAGGGGGGAAAACAAAAATTGCGAACAGAGAAAGGTTTGTCAAAGAAAAAAAAGTCAAAAGAAAGAAGACAAGAATCTGCAGAGGAAGGGAAAAAACAGAGAAAAGAGGAAGTAGAACCATTAGCAGATATAGCAACTCCAAAGAAAAGGAGTAAGAAGAGACAGTAA 1764 0.4853 MDQSQLLHDPNFPLFKTPRKTPSSPAVTTTATNKPPSTAANPTSNGERIEDHPDETATDTDADAETFGDLGLAEWAVKTCRELGMRRPRGVQRRCIPRVLEGRHVLGVDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLRQAKELAARPHLVIATPGRIHALLRNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLPENRQNLFFSATTTSNLQKLRGRYQDKMYVYEAYEGFKTVETLKQQAIFIPKKVKDVYLMHILDKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQFKSGKVSILLATDVASRGLDIRTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIEALIEKQLEMIEYKENDALSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLEEKGLLTKRSKKRKRNKEFAEEGKEQKKEVLTARNVAEMKMMDEGGIEEKAEEGGKQKLRTEKGLSKKKKSKERRQESAEEGKKQRKEEVEPLADIATPKKRSKKRQ* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2154 587 Pfam Helicase conserved C-terminal domain 308 404 IPR001650 -
Gso15g2154 587 SMART helicmild6 323 404 IPR001650 -
Gso15g2154 587 MobiDBLite consensus disorder prediction 521 541 - -
Gso15g2154 587 MobiDBLite consensus disorder prediction 495 514 - -
Gso15g2154 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 443 IPR001650 -
Gso15g2154 587 MobiDBLite consensus disorder prediction 1 62 - -
Gso15g2154 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Gso15g2154 587 Gene3D - 276 449 IPR027417 -
Gso15g2154 587 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 64 497 - -
Gso15g2154 587 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Gso15g2154 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 423 IPR027417 -
Gso15g2154 587 Gene3D - 33 269 IPR027417 -
Gso15g2154 587 SMART ultradead3 84 284 IPR014001 -
Gso15g2154 587 CDD DEADc_DDX49 67 270 - -
Gso15g2154 587 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 215 223 IPR000629 -
Gso15g2154 587 MobiDBLite consensus disorder prediction 474 587 - -
Gso15g2154 587 CDD SF2_C_DEAD 281 413 - -
Gso15g2154 587 MobiDBLite consensus disorder prediction 551 580 - -
Gso15g2154 587 PANTHER RNA HELICASE 64 497 - -
Gso15g2154 587 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2154 Gso-Chr15 49549286 49555261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2154 54 417 Eukaryotic Initiation Factors Gene Family AT3G13920 32.418 1.20e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2154 K14778 - gmx:100804060 1046.96