Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2152 ATGGATAAATCAGAGCAGACTCAGCAGCAACATCAGCATGGGATGGGCGTTGCCACAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTCCCATGGTGGCTTCTGGCACGCCTGCTGTAGCTGTTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCTGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACGTTGAGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTGGTGAATTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCTCCTGGGATGATCATGGGCAAGCCCGTTGGTGCTGAGCAAGCAACGCTGTATTCTACACAGCAGCCTCGACCTCCCATGGCGTTCATGCCATGGCCCCATACACAACCCCAGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA 807 0.4659 MDKSEQTQQQHQHGMGVATGASQMAYSSHYPTAPMVASGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVNSPADMPYYYVPPQHPVVGPPGMIMGKPVGAEQATLYSTQQPRPPMAFMPWPHTQPQQQQPPQHQQTDS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2152 268 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 8 262 - -
Gso15g2152 268 Pfam Core histone H2A/H2B/H3/H4 67 166 IPR007125 GO:0003677
Gso15g2152 268 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Gso15g2152 268 MobiDBLite consensus disorder prediction 235 268 - -
Gso15g2152 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 262 - -
Gso15g2152 268 SUPERFAMILY Histone-fold 60 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2152 Gso-Chr15 49534695 49537786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2152 82 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 1.28e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso15g2152 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2152 K08066 - gmx:100799981 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1372 8 13156316 13159733 Gso15g2152 15 49534695 49537786 GST