Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2127 ATGAAGGAGAGTGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCGTGCAAGCTTCTTCGAAGGAGATGCACGCCAGATTGCGCGTTTGCTCCTTATTTTCCAGCTGATGAACCCCAGAAGTTTGATAGTGTTCACAAGGTTTTCGGGGCTAGCAATGTAAACAAAATGTTAAAGGAATTACCTGAACACCAAAGAAGTGATGCGGTTAGTTCAATGGTATATGAAGCCAAAGCCAGGGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAACAACAAGTTGATGTGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTACACATGAGAATGCGCCAATTCTCACCACTATCAGATCAACAACAACAACCCTCAGTGCTTCCTGAAGCCTCCAATGCATCATCAGAGAACTTGTACCACTCAAGCAGGCTCTTGTCTTCACAAACCAAGTCCCTTTTTAGCATGGACATGGTCGTTGATCAGGCCAACATGGGGCAATCCTTGTGGTCATACTAG 537 0.4693 MKESGRKQGTMSPCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKELPEHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSPLSDQQQQPSVLPEASNASSENLYHSSRLLSSQTKSLFSMDMVVDQANMGQSLWSY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2127 178 Coils Coil 92 112 - -
Gso15g2127 178 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Gso15g2127 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 175 - -
Gso15g2127 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 175 - -
Gso15g2127 178 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2127 Gso-Chr15 48977908 48982859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2127 1 177 AS2 family AT1G31320 65.537 4.86e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso15g2127 LOB 2.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2127 - - gmx:100790989 333.954