Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2120 ATGGGTGTGAACGAAGATTTCAACAAGGATATTGATTATGATCATCATGAGTATGTGGATGATGATGATGTTCCTCTTCCGGGGTTTCGATTCCACCCTACAGATGAAGAACTTGTTAGTTTCTATCTTCAAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCGAAAACCAGTGCCACTGGAGGAGAGAAAGAAGGGTACTTCTTTTGCAGAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACTGGCTCAGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCACATGGAGGAGAAGGCAATGACTGCATTGGCCTCAAAAAAACACTAGTGTATTACCGTGGCAGTGCAGGCAAAGGCATCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCTAACACAGACAACAACAACACCAACCTTCGCAGCTCCAAGAATTACGTAGATGTTCCCCAAGAAGCCGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAATGTCTCACAGAGGAAGCACACGCCAGACTTGAAACAAATATCAGCTAAGCGCCAATCCATTCATGACAAGAGTTCAAGAATGAGCAATGTGGAGTTCAATACTACTAATCAAGAATCATATATAAACTTTGGTGGCCACTATCACAATGAGCAGAAACCTACCATTAACTACACAAACAGTGATCAAAGGAATCAGTATCATGTGATGACTCATCATCAGTTGTGTGCTCCGGTGGCACAGCAGCATCAGCAACCTCAACAACTAACTTCACCATCTTCTAACTTTTGGATTAACAACCCACCTGGGAACGACTTCTTCACGTTTGATAACTGGGATGAGCTTGGATCTTTAGTGAAGTTTGCGGTTGATTCGCCTAGCTTGTAG 957 0.4305 MGVNEDFNKDIDYDHHEYVDDDDVPLPGFRFHPTDEELVSFYLQRKLDKKPISIELIKQIDIYKYDPWDLPKTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGIKTDWMMHEFRLPSNTDNNNTNLRSSKNYVDVPQEAEIWTLCRIFKRNVSQRKHTPDLKQISAKRQSIHDKSSRMSNVEFNTTNQESYINFGGHYHNEQKPTINYTNSDQRNQYHVMTHHQLCAPVAQQHQQPQQLTSPSSNFWINNPPGNDFFTFDNWDELGSLVKFAVDSPSL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2120 318 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 312 - -
Gso15g2120 318 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 15 312 - -
Gso15g2120 318 SUPERFAMILY NAC domain 24 190 IPR036093 GO:0003677|GO:0006355
Gso15g2120 318 Gene3D NAC domain 34 194 IPR036093 GO:0003677|GO:0006355
Gso15g2120 318 Pfam No apical meristem (NAM) protein 27 155 IPR003441 GO:0003677|GO:0006355
Gso15g2120 318 ProSiteProfiles NAC domain profile. 25 190 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2120 Gso-Chr15 48862227 48864925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2120 22 199 NAC Transcription Factor Family AT5G39820 59.474 5.41e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g2120 NAM 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2120 - - gmx:100790471 654.44