Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2114 ATGGTGAAGTTCACAACTCACAGGCTTCGGCACATAATGGACTGCAAACACAATATTCGTAACATGTCTGTTATTGCACACGTCAATCATGGAAAGTCTACCCTCACTGATTCTCTTGTGGCTGCTTCTGGTAATATCATAGCACAAGAGGGTGAAGCTGAGCGTGGCAACACTGTCAAATCCTCTGGTATCTCTCTCTACTATGCGATGCCAGAGGGTGATTTGAAGAATTTCAAAGGGGAACGTGAAGGGAAGGAGTTCCTTATAAATCTCATTGACTCACCAGGGCATGTGGACTTCTCATCTGAGGTCACAACCGCACTTCGCATCACCGATGGAGCACTTGTGGTGGTGGATTGTGTTGAGGGTGTCTGTGTCCAGACCGAAACTGTGCTGAGACAAGCCCTTGGAGAAAGGGTTAAGCCTGTTTTGGCTCTTAACAAGATGGATAAGTGCTTTCTTGAGCTCAATCTTGATCCAGAGGAGGCATACCTAACACTCCAAAGGGTTGTTGAGAGTGTGAATGTAATCATGGGTAACTATGAAGATGCTCTACTTGGAGATGTTAAGGTGTACCCTGAGAAGGGAACGGTTGCCTTTTCCGCTGGCTTGCATGGATGGGGCTTTACACTCACCAACTTTGCCAAGATGTATGCTTCCATGTTTGGAGTTGATGAGGCCAAGATGATGAGTAGGCTTTGGGGTGAGAATTTCTTTGACTCTGCTACCAAAAAGTGGACCAACAGGCACACTGGGGCTTCTACTTGCAAGCGTGGCTTTGTTCGGTTTTGTTATGAACCAATCAAGCAGGTTATTGAACTCTGCATGAATGACCAGAAGGATAAGTTGTGCCCCTTGTTGCAAAAGCTTGGGTTGAACTTGAAGTTCGAGAAGGAGTTGACAGGGAAGGCTTTGATGAAGTGTGTTATGCAAAGTTGGCTCCCAGCAAGTAGTGCCATTCTGGAGATGATGATATTTCACCTTCCATCTCCGGCTAGTGCTCAGAAATATAGAGTTGAGAATTTGTATGAGGGTCCCCTTGATGACCCTTACGCTTCTGCTATCAGAAATTGTGACCCTGAAGGGCCCCTAATGCTTTATGTGTCAAAGATGATTCCTACATCTGATAAGGGAAGGTTTTATGCTTTTGGCCGAGTCTTCTCTGGGAAGGTGTCAACTAATATGAAGGCTAGAATTATGGGGCCAAATTTTGTTCCTGGGGAGAAGAAAGACCTGTATGTGAAGAGTGTTCAGGGGACTTCAATTTGGATGGGGAAGAAATATGAAACAGTTGAGGATGTTCCTTGTGGAAACACAGTTGCCTTGGCTGGTTTGGACCATTTCATCACCAAGAATGCTACTATAACAAATGAGACAGAAATTGAAGCACACCCCATTAGAGCTATGAAGTTTTCTGTGTCACCATTGGTAAGTGTAGCTGTTAACTGCAATGCTGCATCAGATCTTCCTAAGCTTGTTGAGGGCCTAAAACGTTTGGCAAAGTCAGACCCCATCATGATGTGCACAATTTCAGAAACTGGAGAACACATCATAGGTGCTACTGGTGAGCTGCATCTTGAAACATGCGTAAAAGACTTGAAGGACGATTTTATGAATGGGATTGAGATTTCAATATCTGACCCTATTGTCTCCTTCAAGGAGACAGTGCTGGAGAAGTCTTGCCACACTGTGATGAGCAAATCACCTAACAAACACAACCGTTTGTACATGGAAGCAAGGCCAATGGAGGAAGGGCTTGTGGAGGCCATTGAGAGAGGCAAGATTGGTCCAAAGAATAACAACAAAATGGTGTGTGAAGAGTTTGGTTGGGACAAGGATCTAGCCAAGAGAATATGGTGTTTTGGCCCTGATACCATTGGACCCAACATGATGGTGGATGCATGTAAGGGAGTTCAGTACCTCAATGAAATGAAGGAGGCTGTTCTTGCTGGCTTTCAGATAGCATCAAGAGAAGGTCCACTTGCAGAAGAGAACTTGAGAGGGGTATGCTTTGATCTTTGTGATGTTGTACTTCATGCTGATACAATCCATAGGGGAGGTGGCCAAATCATTCCAACTGCTAGAAGGGCTTTCTATGCTGCCATACTTTCAGCTAAGCCAAGACTACTTGAGCCTGTGTATGTGATGGAAATACAAGCACATGAAAAGGCTCTTGGTGGCATCAATAGTGTTGTTAACAAGAAAAGAGGGCATGTGTTTGAGGAAATTCAGAGGCCTGGCACCCCATTTTACAATGTCAAGGCATATATACCAGTGATTGAGTCATTCAAATTCAGTGAAACACTGAGGACTCAAATTGGAGAGCAGGCTTTCCCACAGATGGTGTTTGATCACTGGGATATGGTGCAGTCTGATCCACTGGAACCTGGAACACCAGCTTCTGCATGTGTTGCTGACATTCGGAAGAAGAAAGGGTTGAATGAACAAGTTATGCCTTTGTGTGTGTTCGAGGACATGCTTTGA 2484 0.4477 MVKFTTHRLRHIMDCKHNIRNMSVIAHVNHGKSTLTDSLVAASGNIIAQEGEAERGNTVKSSGISLYYAMPEGDLKNFKGEREGKEFLINLIDSPGHVDFSSEVTTALRITDGALVVVDCVEGVCVQTETVLRQALGERVKPVLALNKMDKCFLELNLDPEEAYLTLQRVVESVNVIMGNYEDALLGDVKVYPEKGTVAFSAGLHGWGFTLTNFAKMYASMFGVDEAKMMSRLWGENFFDSATKKWTNRHTGASTCKRGFVRFCYEPIKQVIELCMNDQKDKLCPLLQKLGLNLKFEKELTGKALMKCVMQSWLPASSAILEMMIFHLPSPASAQKYRVENLYEGPLDDPYASAIRNCDPEGPLMLYVSKMIPTSDKGRFYAFGRVFSGKVSTNMKARIMGPNFVPGEKKDLYVKSVQGTSIWMGKKYETVEDVPCGNTVALAGLDHFITKNATITNETEIEAHPIRAMKFSVSPLVSVAVNCNAASDLPKLVEGLKRLAKSDPIMMCTISETGEHIIGATGELHLETCVKDLKDDFMNGIEISISDPIVSFKETVLEKSCHTVMSKSPNKHNRLYMEARPMEEGLVEAIERGKIGPKNNNKMVCEEFGWDKDLAKRIWCFGPDTIGPNMMVDACKGVQYLNEMKEAVLAGFQIASREGPLAEENLRGVCFDLCDVVLHADTIHRGGGQIIPTARRAFYAAILSAKPRLLEPVYVMEIQAHEKALGGINSVVNKKRGHVFEEIQRPGTPFYNVKAYIPVIESFKFSETLRTQIGEQAFPQMVFDHWDMVQSDPLEPGTPASACVADIRKKKGLNEQVMPLCVFEDML* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2114 827 CDD EF2_snRNP_III 475 547 - -
Gso15g2114 827 Gene3D - 704 813 - -
Gso15g2114 827 SUPERFAMILY Translation proteins 330 465 IPR009000 -
Gso15g2114 827 CDD aeEF2_snRNP_like_IV 547 714 - -
Gso15g2114 827 Gene3D - 3 225 IPR027417 -
Gso15g2114 827 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 332 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 Gene3D Elongation Factor G (Translational Gtpase), domain 3 473 551 - -
Gso15g2114 827 CDD EF2_II 363 458 - -
Gso15g2114 827 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 PRINTS GTP-binding elongation factor signature 90 100 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 PRINTS GTP-binding elongation factor signature 106 117 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 PRINTS GTP-binding elongation factor signature 142 151 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 Pfam Elongation factor G, domain IV 598 706 IPR005517 GO:0005525
Gso15g2114 827 Gene3D Translation factors 331 472 - -
Gso15g2114 827 SUPERFAMILY Ribosomal protein S5 domain 2-like 550 710 IPR020568 -
Gso15g2114 827 Pfam Elongation factor G C-terminus 708 794 IPR000640 -
Gso15g2114 827 CDD eEF2_snRNP_like_C 711 789 - -
Gso15g2114 827 Pfam Elongation factor Tu GTP binding domain 17 330 IPR000795 GO:0003924|GO:0005525
Gso15g2114 827 TIGRFAM small_GTP: small GTP-binding protein domain 20 163 IPR005225 GO:0005525
Gso15g2114 827 SMART EFG_IV_2 593 706 IPR005517 GO:0005525
Gso15g2114 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 329 IPR027417 -
Gso15g2114 827 CDD EF2 20 219 - -
Gso15g2114 827 Pfam Elongation factor Tu domain 2 381 455 IPR004161 GO:0005525
Gso15g2114 827 SUPERFAMILY EF-G C-terminal domain-like 711 813 IPR035647 -
Gso15g2114 827 SMART EFG_C_a 708 797 IPR000640 -
Gso15g2114 827 Pfam Elongation Factor G, domain III 475 537 IPR041095 -
Gso15g2114 827 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 1 826 - -
Gso15g2114 827 SUPERFAMILY EF-G C-terminal domain-like 472 548 IPR035647 -
Gso15g2114 827 Gene3D - 557 703 IPR014721 -
Gso15g2114 827 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2114 Gso-Chr15 48770527 48774016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2114 1 827 Eukaryotic Initiation Factors Gene Family AT1G56070 74.526 0.0 1336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2114 K03234 - gmx:100790826 1657.88