Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2090 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGGCACACAATGATTCCCTTCTCATGATAAACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTATTGGAAGGCCACAGGGAAGGACAGGTCTATCCTCCGCAAGGGCACCCTTGTAGGGATGAGGAAGACTTTGGTGTTCTATCAAGGGAGGGCACCCAAAGGAAATAAAACTGAGTGGGTCATGCATGAGTTTCGAATTGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGAATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTCCTGCATTAATGGACTCTTACATAAGTTTTGACCAAACTCAAACCCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAACAAGCCCCATTTTCAACCACATGGCCACTATGGAGCCTAAGTTACCTGCCAACCATGCAACTAATGCATATGGAGGAGCACCAAATTTGGGTTATTGCTTAGACCCTTTATCATGTGACAGAAAAATGTTAAAAGCTGTTTTGAATCAGATCACAAAGATGGAAAGGAATCCACTTAACCAAAGCCTAAAAGGGTCACCAAGCTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGGATGCCCCACATGTGGAACAATTACTGA 912 0.4441 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVAHNDSLLMINVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGNKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVSAKPRMGSCYEDTGSSSLPALMDSYISFDQTQTHADEFEQVPCFSIFSQNQTSPIFNHMATMEPKLPANHATNAYGGAPNLGYCLDPLSCDRKMLKAVLNQITKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2090 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 299 - -
Gso15g2090 303 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Gso15g2090 303 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 299 - -
Gso15g2090 303 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Gso15g2090 303 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Gso15g2090 303 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2090 Gso-Chr15 48426244 48430975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2090 2 301 NAC Transcription Factor Family AT1G56010 59.621 2.09e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g2090 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2090 - - gmx:100301890 619.002