Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2080 ATGTTAATTTTGGTGGGGAACGTGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCATCTGGAAGGGCCCATTCTATGGTGAGGAGGGTCTCTCTTTCAAGAGGGAACTGTAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAACTCAGTGTCCCTTGATTCTAACAGTAGTAGTAGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAAGGACTATTGGGGACCCTGGGGATGTGGAAGAGAAGAATAAGGTGATTGAATCACTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAGTTCTAAGGTGAATGGTGAAAGGAATAATGGTTCAATGAATAAACCGGTAAGGAGTAATGCAGATGCTAGTCCTAGGGCTGATAAACTGGTGAATTCAGCGGCATATCAGAAGTCTAAAACCATGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTGCAGAAGGTAGTGAAGGAAGTGCCAAAGCCTAATAGTAACAAGAATGAAGGGGAGAAGACTCAAACAAGGGGAGGGGAGGAGGTGGTATCCCAAACTCGTGCTCCTCAACTGCCTTTGAAACCTCAACCGCCTTCACAACCTCAACCGGCGTTGCTATCAAAACCTTCGATAGCTCCCCCACCTGTCAAAAAACCTGTTGTTTTGAGGGACAAGGGAGTATCTGAAACAACATCAGTTAAACCTAAAGAAAAGAAGTCACCCATCTTGATTGATAAATTTGCTTCCAAGAAACCGGTAGTAGATCCTCTAATTGCGCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGGACCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTACGACTGGGGGACCAAGAAGACGGATTTTAGAGGATGATGTGATTCATGATGAGGACGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCCGCTCCCGTCAAAGTAGAAATTCTAGAGGTTGGTGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAGATCCTGGGTTATCTGTACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTGGAAGTCATAGATGCTGATCCATTCAAAGTTGAAGGTTTGGTGAAGAAAAAAGAAATTCTTGATAAAGATGACCTCGACAAACTCAAAGACAGGCCTCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAACTTGCCATGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAAAGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGCGGTGACATCCCAATGGTTCCGATAAGTGCTCTCAAAGGAAAGAACATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACTGTTGTTGAGGCGGGGCTAGATAAATCAAAGGGACCATTCGCTTCATTTATTGTGCAGAATGGCACCCTCAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTACACCCTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTATTGAATCCCTTGATACTGCACGTGAAAGGGCAGAAACTCGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGAAAGGTCACCCTTTCTTCTTTAGCTTCAGCAGTTTCGTCAGGAAAGCTGTCTGGACTAGATTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCTCTGGAGATTCTACCACAAGACAATGTCACTCTGAAGTTTTTGTTGGAGGCAACAGGTGATGTAAGCACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCTGAGAACAAAGCTGTTGAGATTAGATTATATAAAGTTATTTATGAATTGATTGATGATGTACGAAATGCAATGGAAGGACTCCTGGAACCTGTTGAGGAACATGTAACAATTGGTTCAGCAGTAGTACGGGCCGTATTTAGCAGCGGTAGTGGTCGTGTTGCTGGATGTATGGTTACAGAGGGAAAAATACTACAAGACTGTGGTATTCGAGTCAAGCGGAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGTCTTCAACACAGTTCAGAAGAGGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCATTGTAG 3048 0.4488 MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRAHSMVRRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSSSSSKGGDDGAGFVLKPPPKPVLKSPENKSDPILGPSRTIGDPGDVEEKNKVIESLGEVLEKAEKLGSSKVNGERNNGSMNKPVRSNADASPRADKLVNSAAYQKSKTMKSVWRKGDTVASVQKVVKEVPKPNSNKNEGEKTQTRGGEEVVSQTRAPQLPLKPQPPSQPQPALLSKPSIAPPPVKKPVVLRDKGVSETTSVKPKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKGPPPGKFKDDFRKKGATTGGPRRRILEDDVIHDEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPVKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPFKVEGLVKKKEILDKDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKNLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPIAGDEFEVIESLDTARERAETRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEILPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVKAPGSVKSYAENKAVEIRLYKVIYELIDDVRNAMEGLLEPVEEHVTIGSAVVRAVFSSGSGRVAGCMVTEGKILQDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEVFNTVQKRRTLEEASASMAAAVEGVGVAL* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2080 1015 CDD IF2_eIF5B 489 655 - -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 244 269 - -
Gso15g2080 1015 Gene3D Translation factors 662 778 - -
Gso15g2080 1015 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 486 659 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 CDD IF2_mtIF2_II 666 760 IPR044145 -
Gso15g2080 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 662 IPR027417 -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 221 236 - -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 74 132 - -
Gso15g2080 1015 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 793 905 IPR036925 -
Gso15g2080 1015 Pfam Elongation factor Tu GTP binding domain 491 651 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 TIGRFAM IF-2: translation initiation factor IF-2 408 997 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso15g2080 1015 Coils Coil 745 772 - -
Gso15g2080 1015 Hamap Translation initiation factor IF-2 [infB]. 7 995 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso15g2080 1015 MobiDBLite consensus disorder prediction 326 345 - -
Gso15g2080 1015 ProSitePatterns Initiation factor 2 signature. 948 970 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso15g2080 1015 PRINTS GTP-binding elongation factor signature 490 503 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 PRINTS GTP-binding elongation factor signature 542 552 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 PRINTS GTP-binding elongation factor signature 558 569 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 PRINTS GTP-binding elongation factor signature 594 603 IPR000795 GO:0003924|GO:0005525
Gso15g2080 1015 MobiDBLite consensus disorder prediction 74 92 - -
Gso15g2080 1015 Gene3D - 483 661 IPR027417 -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 155 171 - -
Gso15g2080 1015 SUPERFAMILY Translation proteins 901 995 IPR009000 -
Gso15g2080 1015 Coils Coil 131 151 - -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 282 298 - -
Gso15g2080 1015 Gene3D - 794 899 IPR036925 -
Gso15g2080 1015 Pfam Translation-initiation factor 2 794 887 IPR023115 -
Gso15g2080 1015 TIGRFAM small_GTP: small GTP-binding protein domain 488 649 IPR005225 GO:0005525
Gso15g2080 1015 CDD mtIF2_IVc 905 987 - -
Gso15g2080 1015 SUPERFAMILY Translation proteins 662 745 IPR009000 -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 315 345 - -
Gso15g2080 1015 MobiDBLite consensus disorder prediction 149 298 - -
Gso15g2080 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 1005 - -
Gso15g2080 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 1005 IPR015760 -
Gso15g2080 1015 Gene3D Translation factors 900 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2080 Gso-Chr15 48258023 48267620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2080 487 889 Eukaryotic Initiation Factors Gene Family AT1G21160 29.263 9.29e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2080 K02519 - gmx:100778924 1779.22