LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g2018	ATGCTCCCCACCCTCAATGCCGCCGGCGACGTCCTTCTCACCGACCCCCTCTCGCCGCGGCTCGGTAATATCGGCCATGGAGATTTAGTGCTGGTTCGGTCCCCTCTGAACCCTAAGATCAGGCTGATGAAGCGCGTGGAAGGGGACAACGTCACTTACTTCGACGCTTTGCACTCTAAAGCTGCTCAAGTTGCAGTGGTGCCAAAAAGACATGTTTGGATTCAAGGGGATAACATTTATGCTTCCCGTGATTCACGGCATTTTGGTCCTGTTCCATACGGTCTTATAGAAGGAAAAGTGTTTTTCCGGGTATGGCCTCCTGATAGCTTTGGGCTAGACCAATGA	345	0.5217	MLPTLNAAGDVLLTDPLSPRLGNIGHGDLVLVRSPLNPKIRLMKRVEGDNVTYFDALHSKAAQVAVVPKRHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRVWPPDSFGLDQ*	115

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g2018	114	SUPERFAMILY	LexA/Signal peptidase	1	112	IPR036286	-
	Gso15g2018	114	Gene3D	Umud Fragment, subunit A	1	111	-	-
	Gso15g2018	114	Pfam	Signal peptidase, peptidase S26	61	105	IPR019533	GO:0004252\|GO:0006465
	Gso15g2018	114	Pfam	Signal peptidase, peptidase S26	1	53	IPR019533	GO:0004252\|GO:0006465
	Gso15g2018	114	CDD	S26_SPase_I	1	100	IPR019533	GO:0004252\|GO:0006465
	Gso15g2018	114	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	1	112	-	-

Showing 1 to 6 of 6 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g2018	Gso-Chr15	46924488	46949965	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g2018	1	111	MADS-box Gene Family	AT1G29960	49.565	7.01e-33	109

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g2018	K09647		-	gmx:100807792	236.884

Showing 1 to 1 of 1 entries