Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2018 ATGCTCCCCACCCTCAATGCCGCCGGCGACGTCCTTCTCACCGACCCCCTCTCGCCGCGGCTCGGTAATATCGGCCATGGAGATTTAGTGCTGGTTCGGTCCCCTCTGAACCCTAAGATCAGGCTGATGAAGCGCGTGGAAGGGGACAACGTCACTTACTTCGACGCTTTGCACTCTAAAGCTGCTCAAGTTGCAGTGGTGCCAAAAAGACATGTTTGGATTCAAGGGGATAACATTTATGCTTCCCGTGATTCACGGCATTTTGGTCCTGTTCCATACGGTCTTATAGAAGGAAAAGTGTTTTTCCGGGTATGGCCTCCTGATAGCTTTGGGCTAGACCAATGA 345 0.5217 MLPTLNAAGDVLLTDPLSPRLGNIGHGDLVLVRSPLNPKIRLMKRVEGDNVTYFDALHSKAAQVAVVPKRHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRVWPPDSFGLDQ* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2018 114 SUPERFAMILY LexA/Signal peptidase 1 112 IPR036286 -
Gso15g2018 114 Gene3D Umud Fragment, subunit A 1 111 - -
Gso15g2018 114 Pfam Signal peptidase, peptidase S26 61 105 IPR019533 GO:0004252|GO:0006465
Gso15g2018 114 Pfam Signal peptidase, peptidase S26 1 53 IPR019533 GO:0004252|GO:0006465
Gso15g2018 114 CDD S26_SPase_I 1 100 IPR019533 GO:0004252|GO:0006465
Gso15g2018 114 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2018 Gso-Chr15 46924488 46949965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2018 1 111 MADS-box Gene Family AT1G29960 49.565 7.01e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2018 K09647 - gmx:100807792 236.884