Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2017 ATGCCTCTTGGCCAAAGCAGTTCACAACTTTCAGGATCCACTCAGTTATCATCAAAGGATGCATTTCTTTCAAAGGCTGAAGCAAAAAGCATTTCCCAGATTAATGCCATTTCGGAGGAAATTGTTTGTGTTACTGTGGGCACGATTACAAAGATAATGATGGATAATCATTCATGGTGTTATCCAGCTTGTAGTCAATGCCACAAAAAAATTGACATAGGTGTTGTGCCATTCACATGTGGATGTGGGAAACACAATGATCAACCTGTCTTAAGGTATCAAGTTGAAGTGATGATTAAAGACAAAGACGAAGATACAAAATTTTTAGCCTGGGACCGTGAATGTGTAGAGTTGATTGGTCAATCAACCAATGAAGTTAACAACCTAAAAATGGGAGGTGGTGACGTTGATTTAAACGCTTCTCCTCAAGCACTTGATAGGCTACTGGGTTGTGTACTTGCATTTAAAGTCAAGGTCCAGTCAAAGTTCAGCAATGTTATTGTTCTTAAATATTCAAATGAATTAGATTTGATCAATGTTGTGCAGGATATGTTGCCTGATACTGAGCCATGTTCCAAGATCAATAGTCTAATCGTTGAGTCCAGGGTTCCTACACAAGTTGAATCTTAA 630 0.3841 MPLGQSSSQLSGSTQLSSKDAFLSKAEAKSISQINAISEEIVCVTVGTITKIMMDNHSWCYPACSQCHKKIDIGVVPFTCGCGKHNDQPVLRYQVEVMIKDKDEDTKFLAWDRECVELIGQSTNEVNNLKMGGGDVDLNASPQALDRLLGCVLAFKVKVQSKFSNVIVLKYSNELDLINVVQDMLPDTEPCSKINSLIVESRVPTQVES* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2017 209 Pfam Replication factor-A C terminal domain 47 162 IPR013955 -
Gso15g2017 209 Gene3D - 9 184 IPR012340 -
Gso15g2017 209 CDD RPA1_DBD_C 25 171 IPR013955 -
Gso15g2017 209 PANTHER REPLICATION FACTOR A 1, RFA1 33 121 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso15g2017 209 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 33 121 - -
Gso15g2017 209 SUPERFAMILY Nucleic acid-binding proteins 28 165 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2017 Gso-Chr15 46902002 46903864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2017 4 137 Core DNA Replication Machinery Family AT5G08020 31.206 1.27e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2017 - - gmx:102661204 291.967