Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1993 ATGTCATTTTCATCATCAAGCAATGCCTACAACGTTCCATGGGTAGAAAAGTATCATCCCATCAAGGTCGCCGACGCTGTCGTCAATGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCAACAACAACATGCCCAATCTCATTTTATCTGGTCCTCCAAGAACTATCAAAACCACTACCATTCTCGCTCTCATGCACAAGCTTCTTGGAGGACCAAATTGCAAGGAAGCTATTCTCGAACTAAATGCTTCAGATGAAAGTTTTGCTCTGGAAATTGCTTCTGGGATATCAAAGATGTTTTCTCAGAAGAAAGTCACGCTGAGCCTGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGGTTGATTGAACTCTTTCATCATTTCTCTCTTCAAGCGTTCTGTGTTCTTTGCGACCTAAAGCCAGCAACCAGGAATGGCATTAAATCGCAAGCAATGGTTCTTGCTGCTTCCGATGGTGATCGCACCAAGGAACCTGATTCGGTTGGCAATGCCAAAGCTCATGGAAGCTGA 540 0.4574 MSFSSSSNAYNVPWVEKYHPIKVADAVVNEDAVSRLQVIARNNNMPNLILSGPPRTIKTTTILALMHKLLGGPNCKEAILELNASDESFALEIASGISKMFSQKKVTLSLGRHKIVILDEADRLIELFHHFSLQAFCVLCDLKPATRNGIKSQAMVLAASDGDRTKEPDSVGNAKAHGS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1993 179 Pfam ATPase family associated with various cellular activities (AAA) 48 125 IPR003959 GO:0005524|GO:0016887
Gso15g1993 179 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 124 - -
Gso15g1993 179 CDD AAA 27 129 - -
Gso15g1993 179 Gene3D - 5 147 IPR027417 -
Gso15g1993 179 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 124 - -
Gso15g1993 179 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 117 125 IPR000629 -
Gso15g1993 179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 137 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1993 Gso-Chr15 45815757 45818154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1993 7 124 Core DNA Replication Machinery Family AT1G63160 67.797 2.29e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1993 K10755 - gmx:100781364 179.874