Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1977 ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTTGATGTTGATCCTCCTCAAAATGATGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGCACAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCCCATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGCGACAGTTTTGATGGTCTTATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGCGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA 915 0.4404 MASSNLFFDDIRSKVDVDPPQNDESTDVGELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1977 304 CDD RING-HC_SIAHs 54 92 - -
Gso15g1977 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 304 - -
Gso15g1977 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso15g1977 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Gso15g1977 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Gso15g1977 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 304 - -
Gso15g1977 304 SUPERFAMILY RING/U-box 48 96 - -
Gso15g1977 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Gso15g1977 304 SUPERFAMILY TRAF domain-like 109 301 - -
Gso15g1977 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Gso15g1977 304 CDD Sina 170 298 - -
Gso15g1977 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1977 Gso-Chr15 44566010 44571164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1977 47 304 C3H Transcription Factor Family AT2G41980 79.070 1.42e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1977 K04506 - gmx:100793457 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1977 15 44566010 44571164 Gso11g2296 11 38868457 38873865 GST