Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1976 ATGGTGTTCATATTTCCAACGCTTCTGTCCATGAAGCTCCAACCATTTTGGCTGCTTCTTGTAACGTGTTTTTGTGCATTTGCAATGGCCTCTCCTCCTTCTTATGATGCCTTTGCTTCTTCTGAGATTGCCACAGAAGCAAATGCTTTGCTGAAATGGAAAGCCAGCCTTGACAACCAAAGTCAAGCTTCTCTCTCTTCATGGACCGGCAATAATCCTTGCAATTGGCTTGGAATTTCATGTCATGACTCCAATTCTGTTTCCAACATAAACCTTACAAATGTTGGATTAAGAGGTACGTTTCAAAGTCTTAACTTCTCATTACTTCCAAACATCCTCTTTCTGAATATGAGCCACAACTTTTTGTCTGGAAGTATTCCTCCTCAAATTGATGCCTTGTCCAATCTCAACACTCTTGACTTGTCCACTAATAATCTCTCTGGTAGCATTCCCAGTAGCATTGGTAATCTGTCCAAACTTTCATATCTTAATCTTCGTACAAATGATCTCTCTGGGACTATTCCTTCTGAAATAACACAGTTGATTGACCTTCATGCATTGTTGCTGGGTGAAAATAATATCAGTGGATCCCTTCCTCAAGAAATAGGTAGATTGAGGAATCTGAGAATACTTGATACTCATTTGTCCAATCTCACAGGGACAATCCCAATCTCTATAGAAAAGTTAAACAATTTGTCTTATCTAGATTTAGGATTCAACAACCTTTCTGGCAACATTCCTCGGGGGATTTGGCATATGGACCTAAAGTTTTTGTCATTTGCAGATAATAATTTCAATGGTTCCATACCCGAAGAAATTGGGATGTTGGAAAATGTAATACATCTTGATATGAGGCAATGCAATTTCAACGGGTCCATTCCTCGTGAAATTGGGAAGTTGGTTAACCTCAAGATTCTATATCTTGGAGGTAATGATTTTTCTGGTTCCATTCCTCGTGAAATTGGTTTTTTGAAACAACTTGGTGAACTTGGTTTGTCTAATAACTTTCTCTCTGGTAAAATTCCCTCTACAATTGGAAACTTGAGCAGTTTAAATTATCTTTACCTTTATGGAAACAGCTTATCTGGTTCTATCCCGGATGAAGTGGGAAATCTCCATTCACTTTCCACAATCCAACTGTTGGCCAACAACCTCTCTGGATCAATCCCGGCTTCCATAGGTAACTTGATCAATTTGAACTCTATTCGCCTTGATGGAAATAAACTCTCTGGATCCATTCCTTCCACTATTGGAAATTTAACAAACCTCAAGGAATTAACTTTATTTGATAATCAACTTAGTGGCAAGATTCCAACAGAATTCAACAGGCTCACTGCTCTGAAAAATTTGCAGCTAGCTGCTAATAATTTTGTTGGCCATTTACCTCGCAACGTTTGCATTGGTGGAAAGTTGGTAAATTTTACCGCTAGTAATAACAACTTCACAGGCCCAATTCCAAAGAGTTTGAAAAATTGCTCCAGCCTTGTGAGAGTCAGGCTTCAACAAAACCAACTAACGGGTGATATAACAGATGCTTTTGGTGTACTTCCAAACTTGGACTTCATCGAATTGAGTGACAATAATTTTTATGGTCACCTTTCACCTAATTGGGGAAAGTTTGGTAGCCTCACAAGCCTCAAGATCTCCAACAATAATTTATCAGGTGTAATACCACCAGAACTAGGTGGGGCAACCAAATTAGAACAGCTTCACCTGTTCTCAAACCATCTTACAGGAAACATTCCACAAGATTTATGTAACTTGACCTTGTTTGATCTTTCACTCAACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCGAACTTTGAAGCTTGGATCAAATAATTTGTCTGGCTTAATCCCAAAACAACTTGGAAATTTGCTCTATTTATTGGACATGAGTCTGAGCCAAAATAAATTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATTTCTTACAAGTCTTGATCTTAGTGGAAATTCTTTGAGAGGAACAATACCTTCAACGTTTGGAGAATTAAAAAGTTTAGAAACATTGAATCTCTCTCACAATAATCTTTCAGGTGATCTCTCTAGCTTTGATGATATGATAAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGCCCACTTCCTAAAACTGTAGCCTTCAACAATGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGAAATGTCACTGGCTTGGAGCGTTGCCCAACATCAAGTGGGAAATCTCATAATCATATGAGAAAGAAAGTCATAACAGTAATTTTACCCCTTACTTTGGGCATTCTAATAATGGCATTATTTGTTTTTGGAGTCTCGTATTATTTATGCCAAGCTTCAACGAAAAAAGAAGAGCAGGCTACAAATTTACAAACTCCAAACATATTTGCAATATGGAGTTTTGATGGCAAAATGATATTCGAGAATATTATTGAAGCCACAGAAAACTTTGACAGCAAGCATCTCATTGGGGTTGGAGGGCAAGGATGTGTTTACAAGGCAGTGTTGCCTACAGGTCTAGTTGTTGCTGTGAAGAAACTCCATTCGGTTCCAAATGGAGAAATGCTCAATCAGAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACACCGTAACATTGTAAAGTTATATGGGTTTTGTTCGCATTCACAGTTCTCATTTTTGGTGTGTGAATTCCTGGAGAAGGGCAGTGTAGAGAAGATTTTGAAGGATGATGATCAAGCAGTTGCATTTGATTGGAATAAAAGGGTGAATGTTGTCAAATGTGTAGCAAATGCTTTATTCTATATGCACCATGACTGCTCGCCTCCAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTAATCCTAATTCATCCAATTGGACCTCATTTGTAGGAACCTTTGGATATGCTGCTCCAGAGCTTGCATACACAATGGAAGTTAATGAGAAATGTGATGTGTATAGTTTTGGGGTCCTAGCGTGGGAAATACTTTTAGGAAAGCACCCTGGTGATGTTATATCATCTTTATTGCTATCATCTTCGTCGAATGGTGTGACCTCAACACTTGATAATATGGCATTGATGGAGAACTTGGACGAACGTCTCCCTCATCCAACAAAGCCTATTGTTAAGGAGGTGGCATCAATTGCAAAGATAGCAATTGCCTGCCTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCACGTTGCCAATGAGCTTGTAATGTCATGA 3336 0.3855 MVFIFPTLLSMKLQPFWLLLVTCFCAFAMASPPSYDAFASSEIATEANALLKWKASLDNQSQASLSSWTGNNPCNWLGISCHDSNSVSNINLTNVGLRGTFQSLNFSLLPNILFLNMSHNFLSGSIPPQIDALSNLNTLDLSTNNLSGSIPSSIGNLSKLSYLNLRTNDLSGTIPSEITQLIDLHALLLGENNISGSLPQEIGRLRNLRILDTHLSNLTGTIPISIEKLNNLSYLDLGFNNLSGNIPRGIWHMDLKFLSFADNNFNGSIPEEIGMLENVIHLDMRQCNFNGSIPREIGKLVNLKILYLGGNDFSGSIPREIGFLKQLGELGLSNNFLSGKIPSTIGNLSSLNYLYLYGNSLSGSIPDEVGNLHSLSTIQLLANNLSGSIPASIGNLINLNSIRLDGNKLSGSIPSTIGNLTNLKELTLFDNQLSGKIPTEFNRLTALKNLQLAANNFVGHLPRNVCIGGKLVNFTASNNNFTGPIPKSLKNCSSLVRVRLQQNQLTGDITDAFGVLPNLDFIELSDNNFYGHLSPNWGKFGSLTSLKISNNNLSGVIPPELGGATKLEQLHLFSNHLTGNIPQDLCNLTLFDLSLNNNNLTGNVPKEIASMQKLRTLKLGSNNLSGLIPKQLGNLLYLLDMSLSQNKFQGNIPSELGKLKFLTSLDLSGNSLRGTIPSTFGELKSLETLNLSHNNLSGDLSSFDDMISLTSIDISYNQFEGPLPKTVAFNNAKIEALRNNKGLCGNVTGLERCPTSSGKSHNHMRKKVITVILPLTLGILIMALFVFGVSYYLCQASTKKEEQATNLQTPNIFAIWSFDGKMIFENIIEATENFDSKHLIGVGGQGCVYKAVLPTGLVVAVKKLHSVPNGEMLNQKAFTSEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLEKGSVEKILKDDDQAVAFDWNKRVNVVKCVANALFYMHHDCSPPIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPGDVISSLLLSSSSNGVTSTLDNMALMENLDERLPHPTKPIVKEVASIAKIAIACLTESPRSRPTMEHVANELVMS* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1976 1111 PRINTS Leucine-rich repeat signature 662 675 - -
Gso15g1976 1111 PRINTS Leucine-rich repeat signature 683 696 - -
Gso15g1976 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 254 361 - -
Gso15g1976 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 168 313 - -
Gso15g1976 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 314 1111 - -
Gso15g1976 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 183 - -
Gso15g1976 1111 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Gso15g1976 1111 Pfam Leucine rich repeat 662 719 IPR001611 GO:0005515
Gso15g1976 1111 ProSitePatterns Tyrosine protein kinases specific active-site signature. 958 970 IPR008266 GO:0004672|GO:0006468
Gso15g1976 1111 ProSiteProfiles Leucine-rich repeat profile. 685 707 IPR001611 GO:0005515
Gso15g1976 1111 ProSiteProfiles Protein kinase domain profile. 834 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1976 1111 SUPERFAMILY L domain-like 255 588 - -
Gso15g1976 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 183 - -
Gso15g1976 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 314 1111 - -
Gso15g1976 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 254 361 - -
Gso15g1976 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 168 313 - -
Gso15g1976 1111 SUPERFAMILY Protein kinase-like (PK-like) 815 1108 IPR011009 -
Gso15g1976 1111 Gene3D Ribonuclease Inhibitor 205 305 IPR032675 -
Gso15g1976 1111 Gene3D Ribonuclease Inhibitor 306 467 IPR032675 -
Gso15g1976 1111 Gene3D Ribonuclease Inhibitor 468 756 IPR032675 -
Gso15g1976 1111 Gene3D Transferase(Phosphotransferase) domain 1 913 1111 - -
Gso15g1976 1111 SUPERFAMILY L domain-like 533 744 - -
Gso15g1976 1111 SMART LRR_typ_2 659 682 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 611 634 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 229 253 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 133 157 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 300 324 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 540 564 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 181 205 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 396 420 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 444 468 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 683 705 IPR003591 -
Gso15g1976 1111 SMART LRR_typ_2 348 372 IPR003591 -
Gso15g1976 1111 Gene3D Phosphorylase Kinase; domain 1 793 912 - -
Gso15g1976 1111 Gene3D Ribonuclease Inhibitor 43 201 IPR032675 -
Gso15g1976 1111 SUPERFAMILY L domain-like 80 343 - -
Gso15g1976 1111 Pfam Protein kinase domain 836 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1976 1111 Pfam Leucine rich repeat N-terminal domain 45 81 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1976 Gso-Chr15 44522059 44525861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1976 157 1006 Receptor kinase-like Gene Family AT4G08850 44.548 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso15g1976 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1976 - - gmx:100808316 2110.49