Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1973 ATGATGTACAATGATCAGCAGCATCAGCACCAGCAGCACCAGTACCAGCAACAACAGCAGCAGCCTTTCCACCAGCCGCCGGGTCCGGAGTTCCACCGCGGACCGCCGCCGCCGTCGCATCCGCCGCCGATGATGCGGCAAGGCTCCGCCTCGTCGACGAACCTCGCCCCCGAGTTTCACCATCCCGGCCCCGGAGGGCCCCCGCCTCCTCATTACGATGCTCACAGTGATAGCCATGGTGCAAAAAGAATACGAAAGCTTACTCAAAGGAAAGCAGTTGATTATACAAGCACAGTTGTGCGTTATATGCAGATTCGTATGTCGCAGCGGGATTCAAGGGATAGGACTGTACTGCAACCCACCCCGGCAGCAGCAATTGATATGTTGCCAGCAGTTGGCTATCCAGACAATCCATCCACAAGCTTTGCTGCTAAATTTGTTCATACATCTCTAAATAAAAATCGTTGCCCCATTAATCGCGTTCTTTGGACTCCAACAGGCCGGCGACTTATTACTGGTTCACAGACTGGGGAATTTACTCTTTGGAATGGACAATCTTTTAATTTTGAAATGATTCTTCAGGCGCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAATTGGATGGTCTCTGGTGATGATGGAGGCGCAATAAAGTATTGGCAGAACAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGATTTAAGTTTCTGTAGGACAGATTTGAAGTTCTGTTCATGCTCTGATGATACCACAGTTAAAGTTTGGGATTTTGCACGCTGTCAAGAAGAGTGTTCATTATCTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCTACAAAATCTCTATTAGTATCAGGTGGGAAGGACAATCTAGTGAAACTTTGGGATGCTAAAACAGGGAGAGAGCTTTGTTCATTTCATGGCCACAAAAACACTGTGCTGTGTGTAAAATGGAATCAAAATGGCAACTGGGTGTTAACGGCTTCAAAGGATCAAATAATAAAGCTTTATGACATAAGAGCAATGAAGGAACTTGAATCGTTCCGTGGGCATCGCAAGGATGTTACTACTTTGGCATGGCATCCGTTCCATGAAGAGTACTTTGTCAGTGGGAGTTATGATGGTTCCATCTTCCATTGGCTTGTTGGGCATGAAACTCCACAAATTGAAATTTCCAATGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGCAGCAGTGATCATACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGACCCTGCCCGTGATAGATTTAACACTGGCATGCCAGGATATGCTGACCAAAATCCTGTTGTTGGTCGGATGGGTGGTAATTTTACAATAGCTGAAGGCCCAACAACTCCAGGACCATTTGCCCCTGGGTTGACTCGAAATGAGGGTACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGACATGCCTCAAGGGGAGCAGAAGCAACCCCATCCTGTTTCAATGGGTGCTCCTCCTCTTCCCCCCGGTCCACATCCCTCCCTTCTTAATGCCAACCAACAGCAACCATACCAACAGAATCCTCAGCAGATCCCACAACATCAACACCAGGCTCTACCACAACAGATGGGTCCTTTGCCTATGCCTCCAAATATGCAACAACTACAGCACCCTTCCCATTCTCCCTTCCCTAATATGCCTCGCCCTCCACCCCAAATGCCTATTGGCATGCCAGGATCTATACCAGGGATTTCATCAGTGCCTACATCACATCCAATGCCAATGCCAGGTCCAATGGGAATGCAAGGGGCGATGAATCAGATGGGTACTCCAATGCCACAAGGTCCTTATGTAGGCATGAATCAAATGCATTCAGGATCCTTGCCTACAAGTGGAGGGCCACCTCTTGGTGGTTTTCCAGGCAACTTGCCAAATATGCAAGGGCCATCAAATGCCAATTATCCTCAAGGTGCTTCATTTAACAGACCTCAAGGTGGCCAAATGCCTCTGATGCAAGGGTATAGTCCTTACCAGTCTGGTAATCAATCTGGGATGCCTCCAAACGCACAACCATAG 2136 0.4752 MMYNDQQHQHQQHQYQQQQQQPFHQPPGPEFHRGPPPPSHPPPMMRQGSASSTNLAPEFHHPGPGGPPPPHYDAHSDSHGAKRIRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDPARDRFNTGMPGYADQNPVVGRMGGNFTIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPPGPHPSLLNANQQQPYQQNPQQIPQHQHQALPQQMGPLPMPPNMQQLQHPSHSPFPNMPRPPPQMPIGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPGNLPNMQGPSNANYPQGASFNRPQGGQMPLMQGYSPYQSGNQSGMPPNAQP* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1973 711 MobiDBLite consensus disorder prediction 28 44 - -
Gso15g1973 711 MobiDBLite consensus disorder prediction 534 560 - -
Gso15g1973 711 Gene3D - 310 447 IPR015943 GO:0005515
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 436 IPR001680 GO:0005515
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 393 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Gso15g1973 711 CDD WD40 155 436 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 225 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 275 309 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 236 267 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 357 393 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 407 436 IPR001680 GO:0005515
Gso15g1973 711 Pfam WD domain, G-beta repeat 191 224 IPR001680 GO:0005515
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 183 IPR001680 GO:0005515
Gso15g1973 711 Gene3D - 132 309 IPR015943 GO:0005515
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 353 - -
Gso15g1973 711 MobiDBLite consensus disorder prediction 1 25 - -
Gso15g1973 711 PANTHER WD40 REPEAT PROTEIN 69 707 IPR045245 GO:0031124
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 225 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 267 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 267 IPR001680 GO:0005515
Gso15g1973 711 MobiDBLite consensus disorder prediction 1 83 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 314 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 186 225 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 228 267 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 270 309 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 397 437 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 312 351 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 354 394 IPR001680 GO:0005515
Gso15g1973 711 SMART WD40_4 139 183 IPR001680 GO:0005515
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 436 - -
Gso15g1973 711 MobiDBLite consensus disorder prediction 646 711 - -
Gso15g1973 711 MobiDBLite consensus disorder prediction 501 587 - -
Gso15g1973 711 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Gso15g1973 711 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Gso15g1973 711 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Gso15g1973 711 SUPERFAMILY WD40 repeat-like 147 436 IPR036322 GO:0005515
Gso15g1973 711 MobiDBLite consensus disorder prediction 664 711 - -
Gso15g1973 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Gso15g1973 711 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1973 Gso-Chr15 44372488 44393430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1973 309 442 Miscellaneous Gene Families AT5G08390 25.185 2.21e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1973 K15542 - gmx:100791889 1252.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1973 15 44372488 44393430 Gso11g2290 11 38810289 38823526 GST