Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1971 ATGAGAAGAAAGAGTAAGGGCAAACGCAGGCGTGCGGCACCTGCAACAACTCTCACTTCTCCTTCCCTCTCCGCCATTCCCATTCTATCGGATGAACACAACAACAACGCACCAACTGCGTTTGATACCGACTGCGACGATGACAATAATGCCCTTCATCACCGCGGCTCCGAACCCGAACCCGAACCCGAACTCGAACCTGTGGATATATTTGACAAAACTATCTGCATTCACTGCGATAACAAACGCGAAGAGGCGGAGGGAGTTTTAATCTGCGGCGGAAGGGGCTGCCCCGTCGCGGTCCACGCCACCTGCCTCGGCTTCGAACCTGAATTCGACGATTCCGGTAACTTTTGCTGCCCCTATTGCTGGTATAAGCGCGCCGTGGACACGTGTCGACGGTTGAGGGAGAAGGCCATGAAGGCGAAGGGAGAATTGTCACGCTTTTTTGGACAATCACGTGCGGGTGCAACAGATTATAGTGCTGCTGCACGTGTGGATCCGGCTGTTCAGGATAGTGAAGAACTCATGGAGGAAACAGAAACAGAAGAACAATCTGAAGAGAATAAAGATGAGGAGGGAATGGTTGAGGAAAGTGAAAAACTCGTGGAGGGAAAAGAAACAGAAGCTGAAGAGAATAAAGAGGAGGTAGAGGGTAAGGTTCGGGATAGTGAAGAACTCGTGGAGGAAATGCAAACAGAAACAGAAGGACAAACTGAAGAGAATAAAGATGAGGAGGGAGAGGCACGTGTGGGTGCAGATTCCAGTGCTGCTGCACGTAAGAATCCGGTTCAGGATGGGGAAGAAATTGTGGAGGGGATGGAGACAGAACTAGAAGCACAATCTGGAGAGAATAAAGATGAGGAGGGAAAGGTTCGGGACAGCGAAGAACTCGTGGAGGAAATGGAAATGGAAATGGAAATGGAAACAGAAACAGGAGCAGAAGTGCAACCTGAAGAGAATAAAGATGAGGGTAAGGTTCAGGATAGTGAAGAACTCGCAGAGGAAACGGAAACAGAAACAGAAGGACAATCTGAAGAGAAGAAAGATGAGGAGGGAAAGGTGGCTGTGATGAGTAGTTCTGTGAGTGAGACCAATGATTCGGAATCTGTGGCCGAAGCAGTGAAGAAAAGGAAGGATCAGAAGAAGAAGAAGGTTGCTTCATCGAGGAAATCTTTGTCGCGACAACAAGAGCATAAGAATAAGCATTATAAGACTAGAGGGAAATTTGCCAACAAGGACGAGGAGGAAGTTACCAGCTTCAAAAGTATCAGTTTGAGGCAGCAACCACAGAGAATGAAGCAGAGTTCACTGACTGCAAAGCGAAGGAGATTACTTTGGACAGCTGAAGAAGAAAAAGTTCTCAAGGAAGGTGTATCGAAGTTCTCCACAGAAAATCAGAATATCCCTTGGAGGAAAATTTTGGAATTTGGCTGTCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAAGAATATTATCTCCAAGAAAGGTTGGAAGAATTAA 1521 0.4688 MRRKSKGKRRRAAPATTLTSPSLSAIPILSDEHNNNAPTAFDTDCDDDNNALHHRGSEPEPEPELEPVDIFDKTICIHCDNKREEAEGVLICGGRGCPVAVHATCLGFEPEFDDSGNFCCPYCWYKRAVDTCRRLREKAMKAKGELSRFFGQSRAGATDYSAAARVDPAVQDSEELMEETETEEQSEENKDEEGMVEESEKLVEGKETEAEENKEEVEGKVRDSEELVEEMQTETEGQTEENKDEEGEARVGADSSAAARKNPVQDGEEIVEGMETELEAQSGENKDEEGKVRDSEELVEEMEMEMEMETETGAEVQPEENKDEGKVQDSEELAEETETETEGQSEEKKDEEGKVAVMSSSVSETNDSESVAEAVKKRKDQKKKKVASSRKSLSRQQEHKNKHYKTRGKFANKDEEEVTSFKSISLRQQPQRMKQSSLTAKRRRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKKGWKN* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1971 506 CDD SANT_TRF 447 499 - -
Gso15g1971 506 SMART sant 443 501 IPR001005 -
Gso15g1971 506 SMART PHD_3 75 124 IPR001965 -
Gso15g1971 506 Coils Coil 327 347 - -
Gso15g1971 506 Coils Coil 170 190 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 1 42 - -
Gso15g1971 506 ProSitePatterns Zinc finger PHD-type signature. 76 123 IPR019786 -
Gso15g1971 506 MobiDBLite consensus disorder prediction 279 298 - -
Gso15g1971 506 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 25 505 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 378 407 - -
Gso15g1971 506 SUPERFAMILY FYVE/PHD zinc finger 66 127 IPR011011 -
Gso15g1971 506 ProSiteProfiles Myb-like domain profile. 439 499 IPR001005 -
Gso15g1971 506 Gene3D - 436 500 - -
Gso15g1971 506 CDD PHD_SF 75 123 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 195 228 - -
Gso15g1971 506 SUPERFAMILY Homeodomain-like 442 500 IPR009057 -
Gso15g1971 506 MobiDBLite consensus disorder prediction 299 314 - -
Gso15g1971 506 Pfam Myb-like DNA-binding domain 447 498 IPR001005 -
Gso15g1971 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 439 503 IPR017930 -
Gso15g1971 506 MobiDBLite consensus disorder prediction 315 329 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 422 436 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 172 440 - -
Gso15g1971 506 Coils Coil 196 248 - -
Gso15g1971 506 Coils Coil 271 312 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 15 42 - -
Gso15g1971 506 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 25 505 - -
Gso15g1971 506 MobiDBLite consensus disorder prediction 173 194 - -
Gso15g1971 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 158 IPR013083 -
Gso15g1971 506 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1971 Gso-Chr15 44346213 44351590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1971 444 504 Single Myb Histone (SMH) Gene Family AT3G49850 45.161 8.62e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso15g1971 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1971 - - gsj:114388313 884.789