Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1959 ATGAAGGCACCCACCAAACATTCTCAAACCAAAGCCATGACCAATATGGAATCCACCACACCTATACTCACTCCTCTAGTGCTCCTCCTCCTCTTCTCTCTAGCCAAAGGGCTTCACAACCCCAAATGTGATGCTGCCTATCAACATGACCATGATGGCTCAACCCTCCAAGTGTTCCATGTGTTCAGCCCTTGTTCCCCATTCAGGCCCTCAAAACCAATGTCATGGGAAGAGAGTGTCCTACAGCTACAAGCCAAGGACCAAGCCAGGATGCAGTACCTTTCTAACTTGGTGGCTAGGAGGTCCATTGTCCCAATTGCCTCAGGGAGACAAATCACACAGAGCCCTACATACATAGTGAGGGCCAAGTTTGGTACCCCAGCACAGACCCTCCTCTTGGCCATGGACACTAGCAATGATGCTGCCTGGGTCCCTTGCACTGCCTGTGTTGGTTGCTCAACAACCACACCCTTTGCTCCTCCCAAGTCCACCACTTTCAAGAAAGTTGGATGTGGTGCTTCTCAGTGCAAACAGGTACGGAACCCCACTTGCGATGGAAGCGCGTGTGCATTCAACTTCACCTATGGCACTTCCTCTGTGGCAGCTAGCCTGGTCCAAGACACAGTGACCCTAGCCACTGACCCAATCCCAGCCTACACCTTTGGGTGCATTCAAAAGGCCACAGGGAGCTCACTGCCACCACAAGGGCTATTGGGCCTGGGCCGAGGCCCATTATCACTCTTGGCCCAAACCCAAAAACTCTACCAATCTACCTTCTCTTATTGCTTGCCCAGCTTTAAAACACTCAACTTTAGTGGGTCACTGAGACTTGGGCCCGTGGCCCAGCCCAAGAGGATCAAGTTTACCCCTCTTCTCAAAAATCCTAGAAGATCTTCACTTTACTATGTGAATTTGGTGGCTATTAGAGTTGGCCGGAGAATTGTGGATATTCCACCGGAGGCTCTAGCGTTCAACCCTAACACCGGCGCAGGCACCGTTTTTGATTCGGGTACGGTATTCACCCGGCTGGTTGAACCGGCTTACACCGCCGTCCGGAACGAGTTCCGGCGACGAGTTGCCGTTCACAAGAAACTCACCGTGACAAGCCTAGGAGGGTTTGACACATGCTACACAGTCCCAATAGTTGCACCAACAATAACATTCATGTTTTCCGGCATGAACGTGACACTCCCACCGGACAACATCCTCATACATAGCACCGCCGGCAGCGTCACGTGCTTGGCCATGGCACCGGCACCGGACAATGTGAACTCGGTGCTGAACGTGATCGCCAACATGCAACAGCAAAACCACCGTGTGCTCTTCGACGTGCCCAACTCAAGGCTTGGTGTTGCTCGTGAGCTTTGCACCTAA 1374 0.524 MKAPTKHSQTKAMTNMESTTPILTPLVLLLLFSLAKGLHNPKCDAAYQHDHDGSTLQVFHVFSPCSPFRPSKPMSWEESVLQLQAKDQARMQYLSNLVARRSIVPIASGRQITQSPTYIVRAKFGTPAQTLLLAMDTSNDAAWVPCTACVGCSTTTPFAPPKSTTFKKVGCGASQCKQVRNPTCDGSACAFNFTYGTSSVAASLVQDTVTLATDPIPAYTFGCIQKATGSSLPPQGLLGLGRGPLSLLAQTQKLYQSTFSYCLPSFKTLNFSGSLRLGPVAQPKRIKFTPLLKNPRRSSLYYVNLVAIRVGRRIVDIPPEALAFNPNTGAGTVFDSGTVFTRLVEPAYTAVRNEFRRRVAVHKKLTVTSLGGFDTCYTVPIVAPTITFMFSGMNVTLPPDNILIHSTAGSVTCLAMAPAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1959 457 Pfam Xylanase inhibitor C-terminal 301 450 IPR032799 -
Gso15g1959 457 Gene3D Acid Proteases 279 457 IPR021109 -
Gso15g1959 457 Gene3D Acid Proteases 96 278 IPR021109 -
Gso15g1959 457 PANTHER ASPARTYL PROTEASES 28 457 IPR001461 GO:0004190|GO:0006508
Gso15g1959 457 SUPERFAMILY Acid proteases 116 456 IPR021109 -
Gso15g1959 457 ProSiteProfiles Peptidase family A1 domain profile. 118 452 IPR033121 -
Gso15g1959 457 Pfam Xylanase inhibitor N-terminal 118 278 IPR032861 -
Gso15g1959 457 PANTHER ASPARTYL PROTEASE AED3-LIKE 28 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1959 Gso-Chr15 43877396 43881120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1959 118 456 Miscellaneous Gene Families AT1G77480 25.526 7.92e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1959 - - gmx:100788182 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1959 15 43877396 43881120 Gso11g2274 11 38597069 38600968 GST