Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1950 ATGGCAGGTTCAGAACGCAGTAGTAGTAGGGTTTGGCACTACGAATTCGACGTTTTCATCAGCTTTAGAGGAGAAGACACCAGGCTCGGTTTCGTTGGAAATCTCTACAAAGCTCTGACGGAAAAGGGATTCCATACCTTCTTTCGCGAGAAGCTTGTGAGAGGAGAAGAAATCGCAGCATCACCATCTGTGGTGGAAAAAGCAATTCAACATTCAAGAGTTTTTGTTGTAGTGTTCTCTCAGAACTACGCTTCTTCTACACGGTGCTTGGAGGAGCTTCTCAGTATCCTTCGGTTCTCCCAGGATAACCGTCGACCGGTTCTGCCGGTTTTCTATTACGTTGATCCCTCCGATGTGGGACTTCAGACGGGGATCTATGGAGAAGCGCTCGCTATGCATGAGAAAAGATTCAACTCTGAGTCAGACAAAGTCATGAAATGGAGGAAAGCACTCTGTGAAGCTGCTGCCTTGTCTGGTTGGTCTTTCAAACATGGGGATGGATATGAATACGAGTTGATTGAGAAGATCGTTGAGGGTGCCTCCAAGAAGATTAACCGCCCGGTTGGCCTCCAGTATCGAATGCTTGAACTGAACGGGCTTCTGGATGCTGCATCTCTCAGTGGAGTCCATTTGATAGGGATATATGGTGTGGGAGGCATTGGTAAAACAACACTTGCTCATGCACTCTATGATTCTGTTGCTGTTCAATTTGATGCTTTATGTTTCCTTGATGAAGTGAGAGAAAATGCAATGAAACATGGCTTGGTGCATCTCCAACAGACCATTCTTGCTGAAACAGTCGGAGAGAAGGATATTCGACTGCCAAGTGTCAAGCAAGGAATTACACTACTAAAGCAGAGGCTCCAAGAGAAGAGGGTTCTTTTGGTTCTTGATGATATCAATGAGTCAGAGCAGTTGAAGGCACTTGTTGGAAGCCCAGGTTGGTTTGGTCCTGGAAGCAGAGTCATCATTACAACCCGAGACAGACAGTTGCTTGAGAGTCACGGGGTTGAGAAAATATATGAGGTAGAAAATTTAGCCGATGGTGAAGCTCTCGAATTGCTATGTTGGAAGGCTTTCAAAACTGACAAAGTATATCCAGATTTCATTAATAAAATATACCGTGCACTAACTTATGCTTCTGGCCTTCCATTGGCTCTTGAAGTTATAGGTTCAAACTTGTTTGGAAGAGAAATAGTAGAATGGGAATATACCCTAGATCTGTACGAAAAAATACATGATAAAGATATACAAAAGATACTTAAGATATCCTTTGATGCTTTGGATGAACATGAGAAGGATCTTTTTCTTGACATTGCATGCTTCTTCAAGGGATGTAAATTAGCACAAGTTGAATCAATAGTTAGTGGTCGTTACGGTGACAGCTTGAAAGCTACCATTGACGTGTTGCTTGAAAAAACACTTATAAAGATTGATGAGCATGGTCGTGTGAAGATGCATGATTTGATACAACAAATGGGAAGAGAAATTGTTCGACAGGAATCACCAAAACACCCAGGTAATTGCAGTAGGTTATGGTCTCCTGAAGATGTAGCTGATGTTTTGTAA 1569 0.4277 MAGSERSSSRVWHYEFDVFISFRGEDTRLGFVGNLYKALTEKGFHTFFREKLVRGEEIAASPSVVEKAIQHSRVFVVVFSQNYASSTRCLEELLSILRFSQDNRRPVLPVFYYVDPSDVGLQTGIYGEALAMHEKRFNSESDKVMKWRKALCEAAALSGWSFKHGDGYEYELIEKIVEGASKKINRPVGLQYRMLELNGLLDAASLSGVHLIGIYGVGGIGKTTLAHALYDSVAVQFDALCFLDEVRENAMKHGLVHLQQTILAETVGEKDIRLPSVKQGITLLKQRLQEKRVLLVLDDINESEQLKALVGSPGWFGPGSRVIITTRDRQLLESHGVEKIYEVENLADGEALELLCWKAFKTDKVYPDFINKIYRALTYASGLPLALEVIGSNLFGREIVEWEYTLDLYEKIHDKDIQKILKISFDALDEHEKDLFLDIACFFKGCKLAQVESIVSGRYGDSLKATIDVLLEKTLIKIDEHGRVKMHDLIQQMGREIVRQESPKHPGNCSRLWSPEDVADVL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1950 522 Pfam NB-ARC domain 205 423 IPR002182 GO:0043531
Gso15g1950 522 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 18 522 - -
Gso15g1950 522 PRINTS Disease resistance protein signature 211 226 - -
Gso15g1950 522 PRINTS Disease resistance protein signature 287 301 - -
Gso15g1950 522 PRINTS Disease resistance protein signature 380 394 - -
Gso15g1950 522 Gene3D - 345 429 IPR042197 -
Gso15g1950 522 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 160 IPR035897 -
Gso15g1950 522 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Gso15g1950 522 SMART till_3 15 157 IPR000157 GO:0007165
Gso15g1950 522 Gene3D - 182 342 IPR027417 -
Gso15g1950 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 439 IPR027417 -
Gso15g1950 522 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Gso15g1950 522 Gene3D - 13 181 IPR035897 -
Gso15g1950 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 522 IPR044974 GO:0006952
Gso15g1950 522 Pfam TIR domain 16 180 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1950 Gso-Chr15 43657707 43664594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1950 15 522 WRKY Transcription Factor Family AT4G12020 30.534 2.79e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1950 - - gmx:547614 1028.85