Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1949 ATGCAAAGCTTTAGACGCTGGGTTGAGCCAAAAGCCTTCAGATACGACGTGTTCCTGAGCTTCAGGGGCTGGGATACCCGCTTCAGCTTCACCGGCTTCCTCTACAAGGGCCTCTTCGACCACGGATTCCGCACCTTCATGGACGACCGTGAGATCGACAAAGGCTCCCAAATCCCCCAAACCCTCCGCGAGGCGATCGAGGACTCTAGGGTTTTCATCGTCGTCCTCTCTGCCAACTTCGCCTCTTCCTCCTTCTGCCTGGACGAAGTTGTCCTCATCCTCCAAGAGTTCGCCAAGGGTAAGGGTCGCTGGATTTTGCCGGTTTTCTACTACGTGGATCCGTCTCATCTCGCTGATAGTGATTCCTATAAACGGGCATTGGAGGATCAGACCGAGTGGTTTGACTCCCAGAGGATACAAATATGGAAGACTGCTTTGAGTAAATTGGCTACCTTTTCAGGCTTACGACTCATTCGCAGGAACGGGAGTATACTTGAGTACCAGTATATTGAGCTTATCCTTAAAGAGGTTTCTAGACATGTTACTTGTCCAGTTGGACTAAGTCATCGGATGTCAAAAGTTAACAAGCTTTTGTTCTCTGGATCCGATGTTGGAGTCCACATGGTAGGGATATGTGGAGAGGCTAGAATAGGTAAAACAACAGTAGCTCGGGGAGTTTACAACTTCAACTCTGACACTGGATTTGATCACTATTGCTATTTTTATAACGTGGGGGATATTTTAAGTCAGTCTAGATTTGTCAATGAAGGAATGGCAATACTCAACCAGAAAAAGGTTTTTGCAATTTTTGAAGATATTAACGATTCCAAGCAGTTGAAAAACATTATTGAACTAGCTTATCAGTTTGGTTCTGGCAGCAAAGTCATCATTACAGCTCGGAATAAAGGTTTGCTTCAAAGTCATGGGATTGAAAGCATATATGAAGTAGAAAGGTTCAGTAAGACAGAAGCTTTTCAATTGCTTATTTTGAAATCTTTTAATTCTACAAGTGTTAGTGCTGATTATGTGACCATCTTTAACCGTGTCGAGACTTATGCTCTTGGTCATCCATGGACTTTGGAAGTAATCGGTTCCAACTTGAGTGGAAAATCAGTAGAAAATTGTGAATCTGCATTACTTAAGTACGAATCAATAACAAATAGAGACATCCAAAAGATACTAGAAGAAAGCTTTAATGCTTTGGAGAAATGCCAGCAGGAGATGTTAATTCACATTGCATTGAAACTCAAAGAACTTGAATTGGGAGTGGTTGAAGACGAACTTTGTAATTATTATAAAGTCTGTCCCAAAAAAGATATTAGAGTTTTGCTTGATAAATCTCTTATAAAGATTAATGAGCACGGTCAGGTGACATTGCATCCCTCTACACAGGACATGATTAGAGATAAAATTGCACGTTTTGAGGAATATGGCAAGCAAGAAATCCAACCTGTCTCAAAGAATGGAAGCATGATTGGGATTTGA 1485 0.4182 MQSFRRWVEPKAFRYDVFLSFRGWDTRFSFTGFLYKGLFDHGFRTFMDDREIDKGSQIPQTLREAIEDSRVFIVVLSANFASSSFCLDEVVLILQEFAKGKGRWILPVFYYVDPSHLADSDSYKRALEDQTEWFDSQRIQIWKTALSKLATFSGLRLIRRNGSILEYQYIELILKEVSRHVTCPVGLSHRMSKVNKLLFSGSDVGVHMVGICGEARIGKTTVARGVYNFNSDTGFDHYCYFYNVGDILSQSRFVNEGMAILNQKKVFAIFEDINDSKQLKNIIELAYQFGSGSKVIITARNKGLLQSHGIESIYEVERFSKTEAFQLLILKSFNSTSVSADYVTIFNRVETYALGHPWTLEVIGSNLSGKSVENCESALLKYESITNRDIQKILEESFNALEKCQQEMLIHIALKLKELELGVVEDELCNYYKVCPKKDIRVLLDKSLIKINEHGQVTLHPSTQDMIRDKIARFEEYGKQEIQPVSKNGSMIGI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1949 494 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Gso15g1949 494 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 473 - -
Gso15g1949 494 Gene3D - 13 183 IPR035897 -
Gso15g1949 494 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 154 IPR035897 -
Gso15g1949 494 Pfam NB-ARC domain 259 401 IPR002182 GO:0043531
Gso15g1949 494 Pfam TIR domain 15 165 IPR000157 GO:0007165
Gso15g1949 494 SMART till_3 14 152 IPR000157 GO:0007165
Gso15g1949 494 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 473 IPR044974 GO:0006952
Gso15g1949 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 411 IPR027417 -
Gso15g1949 494 Gene3D - 318 409 IPR042197 -
Gso15g1949 494 SUPERFAMILY "Winged helix" DNA-binding domain 389 458 IPR036390 -
Gso15g1949 494 PRINTS Disease resistance protein signature 208 223 - -
Gso15g1949 494 PRINTS Disease resistance protein signature 353 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1949 Gso-Chr15 43651655 43656036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1949 185 473 WRKY Transcription Factor Family AT5G45050 25.240 6.88e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1949 - - gmx:102665522 968.763