Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1906 ATGAAATTCATTGTACTCTTCTTCCTCCTAACATCATCATCATCGTCATCATCATCATCATCATATTCATACGCTCAATCCCCTGCAGCACCAGCAGTGGCTCATGTCCCTTCCACCAGAGCAACGCTTCCCATGTTACTCGTGATCTTCCTCTTCGCCCTCCTCTTCACCGCATTTTGCTCCATCTTCATTTGCTACTGCTCCCATGAAGAACAACCCCAGGTGCTTCCAGAAGCCACGCGTGCCATACCGCGCGGAGTCGACCCGCGTGTGCTCGCCACGTGTCCCATCACGTCCTACTCCACAGTTAAAATGAGGATGTCGCAAAACCCTGTGTTTCAGTGTGCAGTGAGTTTGGCGGAGTTCGACGACGCCAACGCGCTTCGCTTGCTACCTAAGTGCAGTCACGTGTTCCACACACACTGCATCGACGCGTCTCTCAGTAGCGTTTTATCGAAGAAAATCAAACACAGAAAAAAAAATTGTGGAATGAATCGATGGCAGTAA 507 0.499 MKFIVLFFLLTSSSSSSSSSSYSYAQSPAAPAVAHVPSTRATLPMLLVIFLFALLFTAFCSIFICYCSHEEQPQVLPEATRAIPRGVDPRVLATCPITSYSTVKMRMSQNPVFQCAVSLAEFDDANALRLLPKCSHVFHTHCIDASLSSVLSKKIKHRKKNCGMNRWQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1906 168 Pfam RING-like zinc finger 114 143 IPR001841 -
Gso15g1906 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 6 149 - -
Gso15g1906 168 SUPERFAMILY RING/U-box 109 149 - -
Gso15g1906 168 PANTHER RING FINGER DOMAIN-CONTAINING 6 149 - -
Gso15g1906 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1906 Gso-Chr15 42014770 42015276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1906 5 149 Rapid Response to Elicitors AT3G05200 35.625 2.29e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1906 K10664 - gsj:114386162 307.76