Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1880 ATGTCTACCCCACCAATGCCCTTTCTATTCCTCTTTTTGTTCTCCCTCATTGTACCATTACTCTTAGCTCAAGCTCCATCACCATCTCCAACACATTCTCCTCCTCCTCCTTCTCCATCACCATCTCCAAAACATACCCCTCCTCCTCCTCCTTCTACTACCACACCACCCTCTCCAAAACATGTACCTCCTCCTCCTTCTTCTCCATCACCATCTCCAAAACATGCTCCTCCTCCTCCTCATTCTTCTCCACTACCATCTCCAAAACATGCTCCTTCTTCACCACCACCATCTCAAGCACATGCCCCTCCTCTTCCTTCTTCTCAATCACCACCTCCAACACATTCCCCTCCTCCTTCTTCTCCATCACCACCATCTCCAACACATTCCCCTCCTCCTTCTTCTCCATCACCACCATCTCCAACACATGCCCCTCCTCCTACTCCAACACCACCTCCAGCACGTGCCCCTTCACCCCCTCCACCTCCACCACCCTCTTCACCCTCTTCAGCATGCAAGTCCACACTATACCCTAAACTATGCCGCTCCATTGTCTCCTCCATCCGCTCCTCTCCTTCCGACCCCTACAACCTCGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAAAAAACTCGTCTTAGTCTTCAAAGACTTCCTCACAAAATACAAATCATCCTCTTCCCTCAACGCCGCGGAAATCGCGGCACTCGAGGACTGCAGCGAGCTCAACCAGCTCAATGTCAACTACTTGGAGTCGGTTTCGGAGGAGCTCAAGTCGGCCGACTCCTCGAACGACACTGAGCTGGTAGAGAAGATTGAGACATATCTCAGCGCTGTGGCCACTAACCACTACACTTGCTATGATGGGTTGGTTGTGATCAAGAGCAACATTGCCAATGCTATTGCTGTGCCTCTCAAGAATGTTACACAATTGTACAGTGTGTCACTTGGTTTGGTCACGCAAGCTCTGAAGAAAAACCTCAAGACGCATAAGACCCGCAAACATGGTCTTCCCACCAAGGACTACAAGGTCAGGCAGCCACTCAAAAAGCTCATTAAGCTTCTTCACACAAAGTACAGTTGCACAGCATCATTCAATTGTAGTACTAGAAGTGAAAGGATTCTTAAAGAAAGCGAGAACAAAGGAGTTCTTCTAAAAGAGTTTGCGATTGTTAGCCTTGATGGCACAGAAAACTTCACCTCCATTGGAGATGCTATTGCCGCTGCACCCGACAATTTAAGGGCAGAAGATGGCTATTTTCTGATCTATGTCAGAGAAGGAAACTATGAGGAATATGTCACTGTTCCCATTCAAAAGAAGAATATCTTGCTTATTGGTGATGGCATCAACAAGACTTGCATCACAGGAAATCATAGTGTCGTAGATGGTTGGACCACTTACAATTCTTCAACCTTTGCTGTCTCTGGAGAAAGATTTGTAGCAGTGGATGTTACATTCAGAAACACAGCAGGCCCTCAGAAGCACCAAGCAGTGGCCTTGAGGAACAATGCAGACCTCTCCACCTTCTACCGTTGCAGCTTTGAAGGATACCAAGACACTCTCTATGTTCACTCTCTCAGGCAATTCTACAGGGAATGTGACATTTACGGCACTGTAGATTTCATTTTTGGCAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCAATGCCAAACCAGAAGAATGCAGTCACAGCACAAGGGAGAACTGACCCAAATCAAAACACTGGAATTTCAATTCAAAATTGCAAGATTGATGCTGCACCTGATTTGGCTGAAGACTTGAAGTCAACTAACTCATACTTGGGCAGGCCATGGAAAGTGTATTCAAGGACTGTGTTCATGCAGTCATATATTGGAGAACTAATTCAATCTGCTGGATGGTTAGAGTGGAATGGCACTGATGGGTTAAACACCCTCTTTTATGGTGAGTTCAAGAACTTTGGACCTGGTTCTGATACCAGCAAGAGGGTGCAATGGAGTGGTTACAATCTGTTGAGTGCTACTCAAGCGAGGAACTTCACTGTGCATAATTTTACATTGGGGTATACATGGCTTCCAGACACAGATATACCCTATTCTGAAGGACTTTAG 2112 0.4654 MSTPPMPFLFLFLFSLIVPLLLAQAPSPSPTHSPPPPSPSPSPKHTPPPPPSTTTPPSPKHVPPPPSSPSPSPKHAPPPPHSSPLPSPKHAPSSPPPSQAHAPPLPSSQSPPPTHSPPPSSPSPPSPTHSPPPSSPSPPSPTHAPPPTPTPPPARAPSPPPPPPPSSPSSACKSTLYPKLCRSIVSSIRSSPSDPYNLGKFSIKQSLKQAKKLVLVFKDFLTKYKSSSSLNAAEIAALEDCSELNQLNVNYLESVSEELKSADSSNDTELVEKIETYLSAVATNHYTCYDGLVVIKSNIANAIAVPLKNVTQLYSVSLGLVTQALKKNLKTHKTRKHGLPTKDYKVRQPLKKLIKLLHTKYSCTASFNCSTRSERILKESENKGVLLKEFAIVSLDGTENFTSIGDAIAAAPDNLRAEDGYFLIYVREGNYEEYVTVPIQKKNILLIGDGINKTCITGNHSVVDGWTTYNSSTFAVSGERFVAVDVTFRNTAGPQKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMPNQKNAVTAQGRTDPNQNTGISIQNCKIDAAPDLAEDLKSTNSYLGRPWKVYSRTVFMQSYIGELIQSAGWLEWNGTDGLNTLFYGEFKNFGPGSDTSKRVQWSGYNLLSATQARNFTVHNFTLGYTWLPDTDIPYSEGL* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1880 703 PANTHER PECTINESTERASE 162 702 - -
Gso15g1880 703 MobiDBLite consensus disorder prediction 24 173 - -
Gso15g1880 703 Gene3D - 390 703 IPR012334 -
Gso15g1880 703 ProSitePatterns Pectinesterase signature 2. 537 546 IPR033131 -
Gso15g1880 703 Pfam Plant invertase/pectin methylesterase inhibitor 169 319 IPR006501 GO:0004857
Gso15g1880 703 SUPERFAMILY Pectin lyase-like 390 702 IPR011050 -
Gso15g1880 703 TIGRFAM PME_inhib: pectinesterase inhibitor domain 170 323 IPR006501 GO:0004857
Gso15g1880 703 Pfam Pectinesterase 391 686 IPR000070 GO:0030599|GO:0042545
Gso15g1880 703 SMART PMEI_2 163 320 IPR006501 GO:0004857
Gso15g1880 703 MobiDBLite consensus disorder prediction 28 169 - -
Gso15g1880 703 CDD PMEI-like_3 172 322 - -
Gso15g1880 703 PANTHER PECTINESTERASE 162 702 - -
Gso15g1880 703 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 170 323 IPR035513 -
Gso15g1880 703 Gene3D Invertase/pectin methylesterase inhibitor family protein 167 324 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1880 Gso-Chr15 40899287 40903958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1880 171 703 Carbohydrate Esterase AT3G10720 62.756 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1880 K01051 - gmx:100776781 1070.84