Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1872 ATGGGGAATGAAACCAGAAAACTCTCAGATGAGTATGAAGTTTCAGAAGTCCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGCACCAAAAAATCAAGCAGTGACACCAAAACACATGTAGCCATCAAAACCCTGAGAAGGGTAGGCACTGCCTCAAACTCCAACAACCCTTCTGGATTTCCAAGACCAAAGGGTGGAGAGAAGAAGAGCACAGCAGCTATGATGGGATTCCCCACATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACAAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAATGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGGGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGAGAACTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTCCACAGAGATTTGAAGCCTGAGAATTGCCTTTTCTTGGATGTGAGGAGGGACTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCTGTTGAGGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTACGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTGGGGGTGATTCTATATATCTTGCTCTCAGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACCCGTTCAGCGAAGCAACTGATTTCAGATCTTTTGATTGTTGATCCTAGTAGAAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAGGCCAAAGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCTAGGCGCAAACTGCGTGCAGTTGCAATTGCAAGTATTTGGAGCACCACAATCTTCCTCAGAACCAAAAAACTGAAATCCTTGGTGGGAACACATGATCTCACAGAAGAGGAAATTGAAAATCTCAGGATGAGTTTTAAGAAGATATGTGTGAGTGGGGACAATGCCACTCTATCTGAGTTTGAGGAGGTGCTGAAAGCAATGAACATGCCATCACTGATCCCTCTAGCACCGCGAATATTTGACTTGTTTGACGACAACCGAGATGGAACAGTTGACATGAGAGAGATACTATGTGGTTTTTCCAGCTTCAAAAACTCCAAAGGGGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCCGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTACCAGAAGACTGTCTCCCAACTGACATCACTGAACCTGGCAAATTGGATGAGATATTTGACCTAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACGTAGTTCTCTCTTCTCTTCGCCCACAATAG 1584 0.4432 MGNETRKLSDEYEVSEVLGRGGFSVVRKGTKKSSSDTKTHVAIKTLRRVGTASNSNNPSGFPRPKGGEKKSTAAMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGNFSFYEKTWKGITRSAKQLISDLLIVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAVAIASIWSTTIFLRTKKLKSLVGTHDLTEEEIENLRMSFKKICVSGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDDNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEDCLPTDITEPGKLDEIFDLMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRPQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1872 527 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Gso15g1872 527 PRINTS Recoverin family signature 365 384 - -
Gso15g1872 527 PRINTS Recoverin family signature 411 432 - -
Gso15g1872 527 PRINTS Recoverin family signature 435 454 - -
Gso15g1872 527 PRINTS Recoverin family signature 457 475 - -
Gso15g1872 527 Gene3D Phosphorylase Kinase; domain 1 69 135 - -
Gso15g1872 527 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 12 511 - -
Gso15g1872 527 SMART efh_1 485 513 IPR002048 GO:0005509
Gso15g1872 527 SMART efh_1 443 471 IPR002048 GO:0005509
Gso15g1872 527 SMART efh_1 407 435 IPR002048 GO:0005509
Gso15g1872 527 CDD EFh 444 511 IPR002048 GO:0005509
Gso15g1872 527 Pfam Protein kinase domain 91 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1872 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Gso15g1872 527 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Gso15g1872 527 Gene3D - 334 521 - -
Gso15g1872 527 Pfam EF-hand domain pair 442 511 IPR002048 GO:0005509
Gso15g1872 527 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Gso15g1872 527 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Gso15g1872 527 SUPERFAMILY Protein kinase-like (PK-like) 6 326 IPR011009 -
Gso15g1872 527 SUPERFAMILY EF-hand 354 515 IPR011992 -
Gso15g1872 527 ProSiteProfiles Protein kinase domain profile. 12 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1872 527 Gene3D Transferase(Phosphotransferase) domain 1 136 333 - -
Gso15g1872 527 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Gso15g1872 527 MobiDBLite consensus disorder prediction 47 71 - -
Gso15g1872 527 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Gso15g1872 527 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Gso15g1872 527 Gene3D Phosphorylase Kinase; domain 1 3 57 - -
Gso15g1872 527 CDD STKc_CAMK 12 308 - -
Gso15g1872 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 511 - -
Gso15g1872 527 Pfam EF hand 412 427 IPR002048 GO:0005509
Gso15g1872 527 CDD EFh 410 469 IPR002048 GO:0005509
Gso15g1872 527 SMART serkin_6 12 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1872 Gso-Chr15 40568766 40573579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1872 90 514 EF-hand Containing Proteins AT3G10660 37.529 2.16e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Gso15g1872 Pkinase 1.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1872 K13412 - gmx:732616 1027.31