Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1866 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCTACTTCCTCTGTTGGGTTTGAAGCTCCCATTGAAAAAAGAAGGCCTAAGCATCCAAGGAGGAATAATTTGAAGTCACAAAAATGCAAGCAGAACCAAACCACCACTGGTGGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAGAGCAAGAAGGGTCGACAAGTTTATTTGGGGGCATATGATACTGAAGAATCTGCAGCCCGTACCTATGACCTTGCAGCCCTTAAATACTGGGGAAAAGATGCAACCCTGAATTTCCCGATAGAAACTTATACCAAGGAGCTCGAGGAAATGGACAAGGTTTCAAGAGAAGAATATTTGGCTTCTTTGCGGCGCCAAAGCAGTGGCTTTTCTAGAGGCCTGTCTAAGTACCGTGGGGTTGCTAGGCATCATCATAATGGTCGCTGGGAAGCACGAATTGGAAGAGTATGCGGAAACAAGTACCTCTACTTGGGGACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGTACCGTGGAGTCAATGCAGTGACCAATTTTGACATAAGCAACTACATGGACAAAATAAAGAAGAAAAATGACCAAACCCAACAACAACAAACAGAAGCACAAACGGAAACAGTTCCTAACTCCTCTGACTCTGAAGAAGTAGAAGTAGAACAACAGACAACAACAATAACCACACCACCCCCATCTGAAAATCTGCACATGCCACCACAGCAGCACCAAGTTCAATACACCCCCCATGTCTCTCCAAGGGAAGAAGAATCATCATCACTGATCACAATTATGGACCATGTGCTTGAGCAGGATCTGCCATGGAGCTTCATGTACACTGGCTTGTCTCAGTTTCAAGATCCAAACTTGGCTTTCTGCAAAGGTGATGATGACTTGGTGGGCATGTTTGATAGTGCAGGGTTTGAGGAAGACATTGATTTTCTGTTCAGCACTCAACCTGGTGATGAGACTGAGAGTGATGTCAACAATATGAGCGCAGTTTTGGATAGTGTTGAGTGTGGAGACACAAATGGGGCTGGTGGAAGCATGATGCATGTGGATAACAAGCAGAAGATAGTATCATTTGCTTCTTCACCATCATCTACAACTACAGTTTCTTGTGACTATGCTCTAGATCTATGA 1239 0.4439 MKRSPASSCSSSTSSVGFEAPIEKRRPKHPRRNNLKSQKCKQNQTTTGGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQVYLGAYDTEESAARTYDLAALKYWGKDATLNFPIETYTKELEEMDKVSREEYLASLRRQSSGFSRGLSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGVNAVTNFDISNYMDKIKKKNDQTQQQQTEAQTETVPNSSDSEEVEVEQQTTTITTPPPSENLHMPPQQHQVQYTPHVSPREEESSSLITIMDHVLEQDLPWSFMYTGLSQFQDPNLAFCKGDDDLVGMFDSAGFEEDIDFLFSTQPGDETESDVNNMSAVLDSVECGDTNGAGGSMMHVDNKQKIVSFASSPSSTTTVSCDYALDL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1866 412 CDD AP2 155 216 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 SUPERFAMILY DNA-binding domain 53 122 IPR016177 GO:0003677
Gso15g1866 412 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 MobiDBLite consensus disorder prediction 37 51 - -
Gso15g1866 412 ProSiteProfiles AP2/ERF domain profile. 54 120 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 MobiDBLite consensus disorder prediction 229 272 - -
Gso15g1866 412 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 369 - -
Gso15g1866 412 SUPERFAMILY DNA-binding domain 155 216 IPR016177 GO:0003677
Gso15g1866 412 Coils Coil 219 239 - -
Gso15g1866 412 CDD AP2 53 121 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 Gene3D AP2/ERF domain 54 122 IPR036955 GO:0003700|GO:0006355
Gso15g1866 412 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Gso15g1866 412 MobiDBLite consensus disorder prediction 1 18 - -
Gso15g1866 412 Pfam AP2 domain 155 206 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 Pfam AP2 domain 54 112 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 MobiDBLite consensus disorder prediction 1 51 - -
Gso15g1866 412 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 SMART rav1_2 54 126 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Gso15g1866 412 MobiDBLite consensus disorder prediction 224 272 - -
Gso15g1866 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1866 Gso-Chr15 40327768 40333169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1866 150 232 AP2-EREBP Transcription Factor Family AT5G57390 38.462 2.89e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso15g1866 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1866 - - gmx:100527432 795.808