Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1799 ATGGAACGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGACAGGTCCATGTGTGTGCAAGGGGACTCAGGGCTTGTCCTCACCACTGACCCAAAGCCACGCCTCCGTTGGACTGTTGAACTACATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGAGTGAAGGGTCTCACCCTTTACCACCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGATTTCAATGACCACTCGATTAAGGATGGCATGAGAGCTTCGGCTTTAGAACTTCAAAGAAATATCGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAAAAGAACCTTCAGCTGAGGATTGAGGCTCAAGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACACTAGCAGGAGAAAACATGGCCACAAACATGAAGGGTATGGGAGCTCCTCTAGGCACCACTGAAATGGGGGTCATGAAGGAATTTGGTTCTCTCAATTACCCTTCTTTTCAAGATCTTAACATTTATGCCAGTGGTGACCAACAACTTGATGGCTTTATGCCATCTAATAATAACAATGAAACTTTGTTTGTGGGTAAGAAGAGGCCTAATTGCCCCTATAGTGGTAGTGGAAAGAGTCCACTGATTTGGAGTGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGTCCTCAAGATGACCCTTTCAAAGGTGATCATAAGGTTCAGATTTCACCACCATCAATGGATAGTGATCCCATATCGGAGATTTATGACACAAAACCAATGATACTCCATGGAGAAAGTGTAAGTGATCAGAACAAATTTGATGCATCTATGAAGGTAGAAAGGCCTTCTCCAAAAAGATCACCACTTCAACCAGATAGGACTAGTCCTATGATCAATTCTAGTTCTGTGGCACAAGGTAGAAGCTCCCCATTTGGTTGA 1068 0.4429 MERMFPPKKPSTMNSHDRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMATNMKGMGAPLGTTEMGVMKEFGSLNYPSFQDLNIYASGDQQLDGFMPSNNNNETLFVGKKRPNCPYSGSGKSPLIWSDDLRLQDLGTASSCISPQDDPFKGDHKVQISPPSMDSDPISEIYDTKPMILHGESVSDQNKFDASMKVERPSPKRSPLQPDRTSPMINSSSVAQGRSSPFG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1799 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 303 IPR044848 GO:0003700
Gso15g1799 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 303 - -
Gso15g1799 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Gso15g1799 355 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Gso15g1799 355 MobiDBLite consensus disorder prediction 310 355 - -
Gso15g1799 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Gso15g1799 355 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Gso15g1799 355 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gso15g1799 355 Gene3D - 34 92 - -
Gso15g1799 355 MobiDBLite consensus disorder prediction 267 292 - -
Gso15g1799 355 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1799 Gso-Chr15 35634238 35636806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1799 4 355 G2-like Transcription Factor Family AT1G79430 57.256 8.40e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso15g1799 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1799 - - gmx:100796268 712.99