Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1784 ATGTCGGTGCTGATCGTGACAAGCTTAGGGGACCTTGTCGTTGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGCGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACAGTTTCCATGGCAAGTGCTGGAGAGAATCTGAATGCATCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGATGGAAAGCACACAGTTTTTGGTGAGCTAGCTGAAGGATTCGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAGAAAGGAAGACCCTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTACGATGATCCTTCTCAGCTATCTGATTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGAGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATCCGTGATCAAAAGACCGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCAGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGTACGGGAGAGGCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGTCCAACGTGGTGGAGATAGTGCGAGATATGAAATGGTGTTTGATGAAGATAATTCACAACATCCAAGGCAAGATGTAAAACACCAAAGGCATGACAGGGATGACCCAGTCGAAAGAAAAGATCATAGAAGCCGCAGAGATCAGGATATGATAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGGCATGGGGGAAATGGTGAGAACAAAGCACGGTCTGAAAGAGGTGTAATAGATTTGGATTCCAATGCTGATAAGAAAGACAGAGATAGGCACATGGGAAGACATGGAGATGATGATTACAAGCGGAAGGATGAGCATGATTCCAGAAAAAGAGACGAAGATTATGTCTACAAGTGGAAAGACAAGCGAGACTCAAGAAAAAGAGATGAAGATGATGAGTATAGAGAAATACAAACTAGTCGATATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATAGCAGAGATTATAGGAAGAAACCTGAAGACAGTGGAACGCAAGATATGAAGATTGACTCCGGACAAAGAAAAGGAAGTCCAGGTGATGAGGATTACAAAAATGGAAGGGATCATGAGGATTACGAACGTAAAATGAAGGATGAGGATTACAGAAATAGAAAGGAAGAACGTGTGCATAAAAGCCAAGATATTGAAGCGGATGATGGCTACAAACGTAGAAGGGAGGATGCAGATTACAAACGCAGAAGGGATGATGGAGATTACAGACATAGAAGGGAAGAACGTGGACATGACAGGAGATGA 1902 0.4096 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVSMASAGENLNASQFYITLRDDLDYLDGKHTVFGELAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSDFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDQKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRQKDQKGKGGGCFKCGSTDHIAKDCTGEATMKQPQAKYILKDDNVQRGGDSARYEMVFDEDNSQHPRQDVKHQRHDRDDPVERKDHRSRRDQDMIDSNNRDRYGDRSRGHGGNGENKARSERGVIDLDSNADKKDRDRHMGRHGDDDYKRKDEHDSRKRDEDYVYKWKDKRDSRKRDEDDEYREIQTSRYDRRNTDSSHLERRNSRDYRKKPEDSGTQDMKIDSGQRKGSPGDEDYKNGRDHEDYERKMKDEDYRNRKEERVHKSQDIEADDGYKRRREDADYKRRRDDGDYRHRREERGHDRR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1784 633 Gene3D - 180 323 IPR012677 -
Gso15g1784 633 SUPERFAMILY Cyclophilin-like 1 174 IPR029000 -
Gso15g1784 633 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Gso15g1784 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 CDD cyclophilin_RRM 4 169 IPR035538 -
Gso15g1784 633 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Gso15g1784 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Gso15g1784 633 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 510 IPR035542 -
Gso15g1784 633 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Gso15g1784 633 MobiDBLite consensus disorder prediction 168 190 - -
Gso15g1784 633 MobiDBLite consensus disorder prediction 388 633 - -
Gso15g1784 633 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Gso15g1784 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Gso15g1784 633 Gene3D - 324 376 - -
Gso15g1784 633 CDD RRM_PPIL4 240 322 - -
Gso15g1784 633 SMART rrm1_1 244 317 IPR000504 GO:0003723
Gso15g1784 633 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Gso15g1784 633 Gene3D - 1 173 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1784 Gso-Chr15 34271792 34300048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1784 7 166 U-box Gene Family AT5G67530 41.250 3.64e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1784 K12735 - gmx:100794150 1202.58