Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1757 ATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCATTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTCGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAACCACACCCAAGTTTGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATTGTTGCTGTCGAAGATGAAAAGTAG 954 0.5419 MDSSTTFLNDLPPLKRLRLLQQQQQQKEEHHYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDFEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTAEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKNHTQVWEKQQQSGKYKIVAVEDEK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1757 317 PANTHER PHD FINGER PROTEINS 6 103 - -
Gso15g1757 317 PANTHER PHD FINGER PROTEINS 110 314 - -
Gso15g1757 317 MobiDBLite consensus disorder prediction 22 49 - -
Gso15g1757 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 298 IPR013083 -
Gso15g1757 317 Pfam PHD-zinc-finger like domain 181 294 - -
Gso15g1757 317 CDD PHD_BRPF_JADE_like 117 165 - -
Gso15g1757 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 110 314 - -
Gso15g1757 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 103 - -
Gso15g1757 317 ProSiteProfiles Zinc finger PHD-type profile. 115 168 IPR019787 -
Gso15g1757 317 ProSiteProfiles Extended PHD (ePHD) domain profile. 179 296 IPR034732 -
Gso15g1757 317 SMART PHD_3 117 166 IPR001965 -
Gso15g1757 317 SMART PHD_3 241 296 IPR001965 -
Gso15g1757 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 176 IPR013083 -
Gso15g1757 317 SUPERFAMILY FYVE/PHD zinc finger 104 171 IPR011011 -
Gso15g1757 317 Pfam PHD-finger 118 166 IPR019787 -
Gso15g1757 317 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1757 Gso-Chr15 33067086 33069385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1757 16 317 C2H2 Transcription Factor Family AT3G14740 48.974 9.42e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso15g1757 zf-HC5HC2H_2 7.9e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1757 K11380 - gmx:100802652 639.417