Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1738 ATGCAACCCTGTAGCAGAGAAATGCAAGGCCTCAACTCCCTCTTAAACTCTTCCTCCCAAATCTCCCTCCAAGACCTTCAAAATCACACCACTAACCAGATCCAAAATTCACACATGAACCACCAACACCAACTTGCTCACTTTGATTCAACTTCTCACGACGACTTTCTCGAACAAATGCTCTCTTCCTGCTCTTGGACAGACCTCAACCCAAACAAGCCCTTATTATGGGACCCTAACACCCTCAACGACATCAAGCCCCCCGACGAAACGACGCCGTCCAACAACAACAACGACGCTACTACTAATGTCGCAGCTTTTTCCTCCTTCGATGAGCACTCCACCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGCTCCAATAACAACGCGCCCAAAAACGCCGCGGCGGCGGCTCTCATGCTCCAACACCAACTCCTCAGAGACTCTGGTCTTCTCAACATGCCTCTTTCCTTGCCCGGAAACGACGTCGTGGTTGACGCTTCTACCTTCGAATCCCCCAATCCGAGTGGTAAAGCTTCAGTCCAAACTCTCTACAACGGGTTCGCCGGATCTCTGCATGGCGTAGGCCAATCCTCGAACCAGACTCAACATTTTCAACACCCTCAGGGAAGTTCGAATCCGATGCAAGGGCAAAATTTTGGGGCGGTGCCAGCTGGTGGTGGTAGCGCGACGAATCAGGCTCCAGCGAGTGGCGCTGCCGCGGGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGAGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGTAGGGAGAGAATCGCCGAGAGAATGAAGGCCCTACAAGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCTGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGAGACTGCATTCAAGCCAACGGCAAGAGTAACGGCGGTGGGGCCCAGGCTTCAACCACCAACACCAACACCAACCAAACGACAGCGACAACAACCTCAAACGATAGCCTAACGATGACGGAGCACCAGGTCGCGAAACTAATGGAAGAAGACATGGGTTCGGCTATGCAGTATCTTCAAGGAAAAGGTCTTTGCCTCATGCCAATTTCACTTGCCACTGCAATCTCCACTGCCACGTGTCCCACCAGGAACGTTAACGTTAACCCCTTGATCAACGCCGCCGCCGGAGCCACCCATTTTCCGACCGCAGCCAACCCCGCCGGCGAAGGGCCGTCGTCTCCGAGCATGTCCGTACTGACGGTGCAGTCCGCCATCGCAGGCAACGACGGCGCCGCCTCCGTTTCGAAGCCGTGA 1428 0.5497 MQPCSREMQGLNSLLNSSSQISLQDLQNHTTNQIQNSHMNHQHQLAHFDSTSHDDFLEQMLSSCSWTDLNPNKPLLWDPNTLNDIKPPDETTPSNNNNDATTNVAAFSSFDEHSTLASKFRNHQISSNNNAPKNAAAAALMLQHQLLRDSGLLNMPLSLPGNDVVVDASTFESPNPSGKASVQTLYNGFAGSLHGVGQSSNQTQHFQHPQGSSNPMQGQNFGAVPAGGGSATNQAPASGAAAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGKSNGGGAQASTTNTNTNQTTATTTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCPTRNVNVNPLINAAAGATHFPTAANPAGEGPSSPSMSVLTVQSAIAGNDGAASVSKP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1738 475 MobiDBLite consensus disorder prediction 193 267 - -
Gso15g1738 475 MobiDBLite consensus disorder prediction 342 372 - -
Gso15g1738 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 319 IPR036638 GO:0046983
Gso15g1738 475 MobiDBLite consensus disorder prediction 193 220 - -
Gso15g1738 475 SMART finulus 265 314 IPR011598 GO:0046983
Gso15g1738 475 MobiDBLite consensus disorder prediction 76 98 - -
Gso15g1738 475 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 428 - -
Gso15g1738 475 MobiDBLite consensus disorder prediction 347 372 - -
Gso15g1738 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 308 IPR011598 GO:0046983
Gso15g1738 475 Gene3D - 254 316 IPR036638 GO:0046983
Gso15g1738 475 Pfam Helix-loop-helix DNA-binding domain 264 309 IPR011598 GO:0046983
Gso15g1738 475 PANTHER TRANSCRIPTION FACTOR BHLH69 44 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1738 Gso-Chr15 31402401 31406750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1738 235 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.812 4.16e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g1738 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1738 - - gmx:100806899 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1738 15 31402401 31406750 Gso9g0822 9 16207441 16211892 GST