Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1675 ATGGCTTTCCACGACCATCTACCGCACGAAATCACGTTCCAGCCGTTTACCGAGGAGCAGCAGTTAGGTCAGAGCAGGGACATGCAGCGGCTGCTCCCGCTCTCCGGCGGGGCGCCGACGTGGCTGAACAACAGCACCGCGGCGACGCTCCGCCAGCAGAATTTCCTCCACCTGCAGCCGGAATCCGCCGCAACGACGCAGCAAAACGACGACGTTCGCGGCGGCGGCGGCAGCGGCATGGATCGGAACCGGACCGAGAGCAACTCTGAACCGGATGATTTGGCAGAATACAAAGCGGACATTTTAGGTCACCCTCTCTACGACCAGCTCCTATCGGCGCATGTCTCATGCCTGAGAATCGCCACCCCCGTTGACCAGCTTCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTCGACAAGTACTCCGGCATCGGAAACGGAAACGGCGTCGTCGACGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTACGTGTTCATGCTATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAACAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGTGAAGGAACGGGTGCAACAATGTCCGACGATGAAGAAGATCAGGCAGAGAGTAATGCCAACTTGTTCGAAGGAAGCATGGATGGAGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACAGAAACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGCTGAAGCATGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTTTACGAAAGAGAAGAGCGGGAAAGCTACCAGGCGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAGGACAAGGCAAGGTTGGTGCAGGAAACAGGGCTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCGTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1110 0.5153 MAFHDHLPHEITFQPFTEEQQLGQSRDMQRLLPLSGGAPTWLNNSTAATLRQQNFLHLQPESAATTQQNDDVRGGGGSGMDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGIGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLFEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSGAGETSNQSFM* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1675 369 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Gso15g1675 369 MobiDBLite consensus disorder prediction 60 91 - -
Gso15g1675 369 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 362 - -
Gso15g1675 369 MobiDBLite consensus disorder prediction 338 369 - -
Gso15g1675 369 Gene3D - 280 359 - -
Gso15g1675 369 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Gso15g1675 369 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Gso15g1675 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 362 - -
Gso15g1675 369 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
Gso15g1675 369 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Gso15g1675 369 MobiDBLite consensus disorder prediction 203 224 - -
Gso15g1675 369 Pfam ELK domain 261 282 IPR005539 GO:0003677
Gso15g1675 369 SMART KNOX2_2 149 204 IPR005541 GO:0003677|GO:0005634
Gso15g1675 369 CDD homeodomain 284 345 IPR001356 GO:0003677
Gso15g1675 369 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Gso15g1675 369 SMART ELK_2 261 282 IPR005539 GO:0003677
Gso15g1675 369 Pfam KNOX2 domain 153 203 IPR005541 GO:0003677|GO:0005634
Gso15g1675 369 SMART HOX_1 283 348 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1675 Gso-Chr15 25802061 25809250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1675 95 364 Homeobox Transcription Factor Family AT5G11060 82.721 1.28e-167 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso15g1675 KNOX2 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1675 - - gmx:100816347 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0882 17 8254531 8262251 Gso15g1675 15 25802061 25809250 PCT
Gso15g1675 15 25802061 25809250 Gso17g0882 17 8254531 8262251 PCT