Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1663 ATGTGTGTGAAGGACCAAGAGAAAGATATGATGGATAGCACCACAACCAATTCATGGCCTTTGCAACATTGCCACCTTTTGCTCAAGACTCACATGGACAAAAAAGGATCTTTCCTCAGAACTTCAAGTGATGACACCACCAACATCAGTGTTCAAAATTCCTTTCCTCTAGAAAGCATATGTGAGGACACAGTGGTTGTAGACAAGAAACAGAATCTGATGAATTTTGTTCCAGCTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGAACGTCCTTACATGGAGGATACTCACATATGCATTGGAGATTTGGTAAAGAAGTTTAATTATGATGTACTTTCTGGGGAGGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATAATCTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTGTGGAGACTGATGCTGCATTTCTAAAAACATCCTCTCACGAGCCTTCCCTTTCTTCTGGTACAACTGCAATAACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGATTGCCGAGCTGTTTTGTCCCACCATGGAAGGGCCATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAATGAAAGGACACGAGTTGAGTCCCTAGGTGGCTTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGTGCTCTTGGAGACTGGCACATTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGAGAAACAATGCTGCAAGGAAATAGTGCAGGAAGCAAGCAAGAGAGGATCAACAGATAACTTGACAGTTGTGATGGTGTGTTTTAACTTAGATCCTCCACCACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAAAACAATAA 1140 0.4193 MCVKDQEKDMMDSTTTNSWPLQHCHLLLKTHMDKKGSFLRTSSDDTTNISVQNSFPLESICEDTVVVDKKQNLMNFVPALRSGEWSDIGERPYMEDTHICIGDLVKKFNYDVLSGEAVSFYGVFDGHGGKSAAQFVRDNLPRVIVEDVNFPLELEKVVKRSFVETDAAFLKTSSHEPSLSSGTTAITAIIFGRSLLVANAGDCRAVLSHHGRAIEMSKDHRPNCINERTRVESLGGFIDDGYLNGQLGVTRALGDWHIEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKQCCKEIVQEASKRGSTDNLTVVMVCFNLDPPPPVVVERTRVRRSISAEGLQNLKCLLKQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1663 379 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Gso15g1663 379 Coils Coil 313 333 - -
Gso15g1663 379 ProSiteProfiles PPM-type phosphatase domain profile. 81 346 IPR001932 -
Gso15g1663 379 SMART PP2C_4 71 344 IPR001932 -
Gso15g1663 379 SUPERFAMILY PP2C-like 72 347 IPR036457 -
Gso15g1663 379 Pfam Protein phosphatase 2C 93 338 IPR001932 -
Gso15g1663 379 SMART PP2C_SIG_2 96 346 IPR001932 -
Gso15g1663 379 CDD PP2Cc 81 346 IPR001932 -
Gso15g1663 379 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Gso15g1663 379 Gene3D - 64 349 IPR036457 -
Gso15g1663 379 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1663 Gso-Chr15 25354393 25358109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1663 47 377 PP2C-type Phosphatase Gene Family AT2G25620 57.015 2.49e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gso15g1663 PP2C 1.5e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1663 K14803 - gmx:100813157 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0890 17 8310139 8313456 Gso15g1663 15 25354393 25358109 PCT
Gso15g1663 15 25354393 25358109 Gso17g0890 17 8310139 8313456 PCT