Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1614 ATGAGGCAGTCTTTTGATCCTTCATTTTTGGGTCCTTCCAAGATTCCATCTATAAAAGTACCTGGAAAAGCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTCTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAACTTGAATGAAACTGCAAATGGTTATCAATCTATTGATGACATCTCATCTGGTTTTAAGAAGCTCCATCAAGATGCAGATGGAAATGGTTCACTTGAAGATGGTGATACTCATGCAATTGGACCTGCCCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTAAGTGGCTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAGGTCTCACTGTGGGGTTGTCTAAGTTAAGCTTCGCTGATAGTACCGTTGGCAATGGTTTGCCCCCTTATTCATTTCCCAATGGTGTGGGAACTGTTGCGGGAGAACATCCTTATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGACTCAGAGCTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGGATAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTGGGTTCTCCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAGACTATCAATTATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAACACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGAAAGGAGCAGTCAAGGAGAGCACATATTTACCGGTATGAATTCATCACACGGAGCTACTTTTCAATCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCATTGTCCTCAATTGGTCCATCAACTTCAAATGGATCCTCAGTGGAAACTTTGTCTGGGCCACAGTTCCTATGGGGAAGCCCAACTCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTGCATCGAATGGAAAGAGCCATGCCTTCCCATATTCAACTCAGAATAGTTCTTTTGTTGGTTCATCACAGCATCTTCACCACCATCATGTCGGCTCCGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGCTATGGAGGCATTGGTCCAGGGCATAATGATGGAAATCACATGGTTAATGTGGGTGGATCTGTTAATCCTAACATTACTATCCCGAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTTTTGGGAAATGGCCCTTTTCCAGGACTGCCACCTACCACTTTGGAGGGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAACAATTTCAGCTCAACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAAATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCTCCCTCTCTTATTATTCCATTCTTCGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTAGAATTCAAGGAAAGTCTGCCCTCGTGAGCCATTTTCAAAATTCAAGTCTGATGAATGAAGATAAGCGATGTCGTCCTATTCTCTTCCACTCCGAGGGTTCTGAAGTTTGTGATCTGATTGTACAAGACCACCACCTTCCCTCCAACTCCAACAATCTAAACATTCAGGCACCAAGGCCAAGTGAGTTCTATTCAAGTGATTTTGCTGGGAGTCCTCCAAAGGCAGGCCCTTCTGCAAGCTTGGATGCAAATTAA 2589 0.4268 MRQSFDPSFLGPSKIPSIKVPGKAGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETANGYQSIDDISSGFKKLHQDADGNGSLEDGDTHAIGPALPDDEEELLAGITDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQEGLTVGLSKLSFADSTVGNGLPPYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTINYSPGSRIISPTTGNHLPGLASILQPQVSNTVKAAAIGNDLERSSQGEHIFTGMNSSHGATFQSHSLPEPKFSQYRGALSSIGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFASNGKSHAFPYSTQNSSFVGSSQHLHHHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGIGPGHNDGNHMVNVGGSVNPNITIPRNISDNGSSNFRMRSSPRLSPVFLGNGPFPGLPPTTLEGLADRARSRWIENNGSQVDSKKQFQLNLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFFETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVCDLIVQDHHLPSNSNNLNIQAPRPSEFYSSDFAGSPPKAGPSASLDAN* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1614 862 CDD RRM3_MEI2_like 698 783 IPR034454 -
Gso15g1614 862 Gene3D - 278 377 IPR012677 -
Gso15g1614 862 Pfam RNA recognition motif 2 695 791 IPR007201 -
Gso15g1614 862 Gene3D - 183 277 IPR012677 -
Gso15g1614 862 CDD RRM2_MEI2_like 278 348 - -
Gso15g1614 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 853 - -
Gso15g1614 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Gso15g1614 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Gso15g1614 862 PANTHER PROTEIN MEI2-LIKE 2 3 853 - -
Gso15g1614 862 SMART rrm1_1 280 348 IPR000504 GO:0003723
Gso15g1614 862 SMART rrm1_1 697 773 IPR000504 GO:0003723
Gso15g1614 862 SMART rrm1_1 195 263 IPR000504 GO:0003723
Gso15g1614 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Gso15g1614 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Gso15g1614 862 SUPERFAMILY RNA-binding domain, RBD 697 781 IPR035979 GO:0003676
Gso15g1614 862 MobiDBLite consensus disorder prediction 1 22 - -
Gso15g1614 862 CDD RRM1_MEI2_like 193 269 IPR034453 -
Gso15g1614 862 MobiDBLite consensus disorder prediction 841 862 - -
Gso15g1614 862 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1614 Gso-Chr15 23358862 23365437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1614 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 7.32e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1614 - - gmx:100800877 1717.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1614 15 23358862 23365437 Gso9g0746 9 11646721 11653634 GST