Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1569 ATGGGAAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTACCTCTGTTCCTCCTCCTGGAATGGACATGTCACAACTTTATTGTGGAGGCTGTACGACATTGCTAATGTACACACGTGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTACCAGTACTAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGCTGCAGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA 537 0.4358 MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQVIHCTNCRTTLMYPYGASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSLQSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1569 178 Pfam LSD1 zinc finger 7 31 IPR005735 -
Gso15g1569 178 Pfam LSD1 zinc finger 84 108 IPR005735 -
Gso15g1569 178 Pfam LSD1 zinc finger 46 70 IPR005735 -
Gso15g1569 178 PANTHER PROTEIN LSD1 1 178 IPR040319 -
Gso15g1569 178 MobiDBLite consensus disorder prediction 121 146 - -
Gso15g1569 178 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 110 IPR005735 -
Gso15g1569 178 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Gso15g1569 178 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Gso15g1569 178 PANTHER PROTEIN LSD1 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1569 Gso-Chr15 21605645 21611246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gso15g1569 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1569 - - gmx:100792570 344.354