Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1557 ATGGAGGCTCGATTAGAGGGGAAAAACCAGTATTTGTATGGACCTGTGGTGCCTGAGATGAAGAGTGTTGGGAAGAGAACTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTAGGCAACTTAATTCAGTGCCATCAGATTGCAGGAGCCGTGAGTTGTTCCCTGCTGATCCTGAAATTCTTGTAAGTGGTGATGCTTCTAACAATTTGTCTTCTGCATATGATGATGTTAACCTTGGTGAGGGAAAGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTATTGATGAAGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAAAGTGGGAAGAAGACAAAGCTGACTGCGAGTACTTCGAGCCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGCAATGTGAAGGATTACCACCGTCGCCACAAAGTTTGTGATATGCATTCTAAGGCTACCCAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGCTGTCGTAGGCGTCTGGCAGGCCACAATAAAAGGAGGAGGAAAACGCATCCTGATGCAACTGTAGTTAATGGAGGCTCTCTGAATGAAGAAAAGGGCAGTAGCTATTTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCTAATGGCTCGGATAATATGAGGAACCAGGATGTTCTATCACATCTGCTGAGGAACCTAGCAAGTCTGACTGGTACAATTAATGGAAGAAATATAGTGTCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGAGCTGCACAGAATGTTCCAAACACAAATTCAAATGGTCCTGAACCGTCCAGTCCTTTATATTCTTCTATCAAAATGGATGATGGTCTAATCCATCGGAACCCTCCAGAGTCTTTGGTACAATGTGAGACGACTCCTGCTAATGATATGGCTAAAGAATGTATAGCTTCAGGCAATGATGAAGTAGGAAGTTTAAAATCTCCTTCAGTTCCACTGTCCACAAATGTACTTCTGTCAATGGATAGCCTTCCACCACAATCAATTGCAGCACAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGTATATGATGATGTACAGGATTATGTTGAGAACACGAGGAATTGTCGTCCTCCTCTGCCTTCAGGAAATGGGTCTCTTGATCATCCTTTATTGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATGTTGACTATATATCTCCGCCTAGAAAATTCTGCTTGGGAAGAGCTATGCTACAATCTAGGACCCAGCTTGAGAAAGCTTGCCGCGTCTAATGATTGTTTCTGGAGAACAGGATGGATATATACAAGAGTGCAGCATTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGCACCATTGCGCCTCAAAAGTCCGCAAAGTTGTCAAATTTTATGCGTTAAACCACTTGCTGTTTCTGCTAGTTCTTGTGCTCAATTTGTTTTGAAAGGATTCAATTTTTTGCTGTCTAACTCGAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAATTGTTATGATTTGATTGACAGTGTTGACGCAGCCAATGGACATCATGAGCTTCAGCATCTCAGATTCTCTTGTCATGTACCGAATGTGACTGGAAGAGGGTTTATCGAGGTGGAAGACAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGCTCAGAGATCTGTAAGCTGGAGAATGTCATTGAGGCAGCAGAGACTGCTGATGACATCCAAATAAAAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGCGTGAAAGTTAGGCTAGGTCCTGTGGCACCTGTCCAAGATAACTTCCATTTTAATCGATTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTGTCTTTGAGGGCACTGTTGATACCGGAGATCATGCCTCTGTTGAGTTAGCTTTGTTAGAGATGGGTCTTCTACACAAAGCAGTAAAAAGAAATTTCCGACCTATGGTTGAACTACTATTAAAATTTGTGCCAGTTAAGGCTTCAGATGGTGGAGACAGTAATGAGAAGCAAATCAACAAGTCCCCTGACAGATTCTTATTCAGACCTGATACTGTTGGGCCTGCCAGGTTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGCTCAGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAAGTGAGGCATGGAAAAGTGCTCAGGACGCTACAGGTTTGACCCCCTATGACTATGCATCCCTGCGGGGCTACTATTCTTACATTCAACTTGTCCAGAGGAAAACAAGCAACACATGCAAAAACCCACAACACGTGCTTGATATCCCAGGCAACCTTGTAGATAGTAACACAAAGCAGAAGCAATCAGATGGGCACAGATCATCAAAAGTTTTAAGTTTGCAGACTGAGAAAATTGAAACAACCGCAATGCGTCATTGTGGGCTATGCCAGCAAAAGCTGGTGTATGGTGGCATGAGAAGGGCACTGGTTTTCAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCTGTGTGTGTCTGTGTAGCTTTGCTCTTCAAAAGCTCACCCAAAGTTTATTATGTATTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGGTCAATCTAA 3099 0.4337 MEARLEGKNQYLYGPVVPEMKSVGKRTLEWDLNDWKWDGDLFTARQLNSVPSDCRSRELFPADPEILVSGDASNNLSSAYDDVNLGEGKRELEKRRRGVIDEGGVEMNDGAGSLNLNLGGQVYPIMEGEEKSGKKTKLTASTSSRAVCQVEDCRADLSNVKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATVVNGGSLNEEKGSSYLLMSLLRILSNMHSNGSDNMRNQDVLSHLLRNLASLTGTINGRNIVSLLEGSQDLVKAGTSGAAQNVPNTNSNGPEPSSPLYSSIKMDDGLIHRNPPESLVQCETTPANDMAKECIASGNDEVGSLKSPSVPLSTNVLLSMDSLPPQSIAAQTTVGRIGLSNIDLNNVYDDVQDYVENTRNCRPPLPSGNGSLDHPLLVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIMLTIYLRLENSAWEELCYNLGPSLRKLAASNDCFWRTGWIYTRVQHSVAFLYNGQVVLDAPLRLKSPQSCQILCVKPLAVSASSCAQFVLKGFNFLLSNSRLLCALEGKYLVQDNCYDLIDSVDAANGHHELQHLRFSCHVPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQIKTKLMEEKTQALYFIQEMGWLLHRSRVKVRLGPVAPVQDNFHFNRFMWLVGFSMDHDWCAVMKKLLNIVFEGTVDTGDHASVELALLEMGLLHKAVKRNFRPMVELLLKFVPVKASDGGDSNEKQINKSPDRFLFRPDTVGPARLTPLHVAASMHGSENVLDALTDDPGMVGSEAWKSAQDATGLTPYDYASLRGYYSYIQLVQRKTSNTCKNPQHVLDIPGNLVDSNTKQKQSDGHRSSKVLSLQTEKIETTAMRHCGLCQQKLVYGGMRRALVFRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1557 1032 MobiDBLite consensus disorder prediction 445 474 - -
Gso15g1557 1032 Gene3D - 774 931 IPR036770 -
Gso15g1557 1032 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1031 - -
Gso15g1557 1032 SUPERFAMILY Ankyrin repeat 803 917 IPR036770 -
Gso15g1557 1032 Pfam SBP domain 148 221 IPR004333 GO:0003677
Gso15g1557 1032 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Gso15g1557 1032 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Gso15g1557 1032 MobiDBLite consensus disorder prediction 443 474 - -
Gso15g1557 1032 MobiDBLite consensus disorder prediction 212 233 - -
Gso15g1557 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1031 IPR044817 GO:0003677
Gso15g1557 1032 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1557 Gso-Chr15 21006306 21017589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1557 1 1031 SBP-box Gene Family AT3G60030 47.706 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso15g1557 SBP 7.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1557 - - gmx:100792774 2043.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1557 15 21006306 21017589 Gso9g0686 9 9544156 9555761 GST
Gso7g1979 7 43754193 43761192 Gso15g1557 15 21006306 21017589 PCT
Gso15g1557 15 21006306 21017589 Gso7g1979 7 43754193 43761192 PCT