Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1536 ATGGAAGATAAAGCTGCGATAAAAGAATTGCTGGAAGACGAGGAAAACCCATATGATAATACTATGGGATCTACTCTTCTAAGCTTGAGCCTGAATAACTCAGGGCAACCCCTTAACCAAATGGGGATGCTGCGAATCAAGCTTGAGGAAGCAAAGAAAGAGAATGAGATTTTGAAGGCTATGCTGAATCAGGTTAATCAACACTGCACTGCTCTTCAGAATCGCATACTTTTTGAGATGCAGCAGCATCAACTATGTTCATCATCACCTCGCAATGATAATAATAATCATGACTTGCAGGGAAACAAACAAGATGCGGAGAAATTACCAATGCTACACACCCGGCAGTTTTTGAATATGGGCGAGTCTTCATCAATTTTAGACGGCAACACAAAAGCATGTGCAATAGCAGAAAACGCTGAAAAGAAAATGTTAGGCAAAAACCTTGCATGTGATGATAATAAGTACAATGTTGAAGGTGAAATCAACAGTCAAATAACATCGCATGAAGCAAAAAGCACAGAAGATCAAGTATCTGAGGTTACTTGCAGGAGAGCTAGAGTGTCCATAAGAGCAAGATCAGATTTTTCTTCGATGTTTGATGGGTGTCAATGGAGAAAGTACGGACAAAAGACAGCGAAAGGCAACCCTTGTCCTCGAGCCTACTACCGTTGTAGCATGGGAACTGCATGTCCGGTTCGTAAGCAGGTGCAAAGGTGTTTCAAGGATGAGACTGTTCTCATCACAACCTATGAAGGGAACCACAACCATCCCCTCCCACCAGCAGCAAGACCTTTGGCAAGCTCAACATCAGCCGCATTGAACATGTTCCTTTCTGGCTCAATCACAAGCTCACATTCCAGCACCATTCTACCTAACTCACCCCTATCCACTATTTCCCCAAGTACTGCTGTGGCCACTTTCTCCCAAAATGCAACATGCCCCACAGTAACACTGGACTTAACCCAGCCAAATAACAACAACTATCTCCAATTCCAAAGTGCCACCACTTCTTCACAAGACCATACACAATCATTTTTCCCTCTGCCATTGCATGGAAACCCTCAAAATTATTCTGAGGGGTTGATGCACTTGTGGTCTAAGGTTCCAATTCCAACCATGTTAGCCCCAGAGAAAAACCTTGCCCTGGTGGATGTTGTCAGTGAGGCCATAAACAAAGATCCTTCTCTCAAGGCAGCATTGTTTTCAGCCATTTCCTCACTCACTGGAGATCCTGATCAGAAGGACAACATCAATAACATAAGCCAATTACATAGTAAGAGTAGTGGTGGTTATGACCCTTGTTCTAAGATGCCTGCAATACCACCTATTCAGCCTTACACTAAGTTGATTTAG 1356 0.4322 MEDKAAIKELLEDEENPYDNTMGSTLLSLSLNNSGQPLNQMGMLRIKLEEAKKENEILKAMLNQVNQHCTALQNRILFEMQQHQLCSSSPRNDNNNHDLQGNKQDAEKLPMLHTRQFLNMGESSSILDGNTKACAIAENAEKKMLGKNLACDDNKYNVEGEINSQITSHEAKSTEDQVSEVTCRRARVSIRARSDFSSMFDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPLASSTSAALNMFLSGSITSSHSSTILPNSPLSTISPSTAVATFSQNATCPTVTLDLTQPNNNNYLQFQSATTSSQDHTQSFFPLPLHGNPQNYSEGLMHLWSKVPIPTMLAPEKNLALVDVVSEAINKDPSLKAALFSAISSLTGDPDQKDNINNISQLHSKSSGGYDPCSKMPAIPPIQPYTKLI* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1536 451 Pfam WRKY DNA -binding domain 201 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1536 451 Gene3D WRKY domain 184 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g1536 451 Coils Coil 41 75 - -
Gso15g1536 451 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1536 451 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1536 451 SUPERFAMILY WRKY DNA-binding domain 193 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g1536 451 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 426 - -
Gso15g1536 451 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 426 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1536 Gso-Chr15 19209359 19215025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1536 44 323 WRKY Transcription Factor Family AT4G04450 41.346 2.69e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso15g1536 WRKY 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1536 - - gmx:100781603 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1536 15 19209359 19215025 Gso13g0871 13 23011026 23014864 PCT
Gso15g1536 15 19209359 19215025 Gso17g0348 17 3139026 3143878 PCT