Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1527 ATGGCTGCTGGTGTCACTGTCAAGTCCGAGGTTCTAGAATCTTCTCCTCCTGAAGGAGTTTGTTCCAACACGGTGGAAAACCACCTGGTCCAGACCAATTTGTCTGATGGGTCACCCAACAAGTCTGTGCCAGCATCTGGACTTGATGCAGTGATTCCTAGTGCAAATCAGCTTACCATCTTCTATAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAGAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCCACTGAAATGAAGAAGATTGGGACCCAAACTACCCTCATTTCACCTGTTCCGTCAAGGCCTTCTTCTCCACATGGAATCACTAACAATATTGGTTCCTCACAGAAGAGTTCCATCTGCAGGCTGCAAGCTGAATTCCCAATAGCACGTAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGTCGTGATAGGCTTGGGAGCAAGACACCTTATCCTTCCTCATCAACTACAAAAGTGGCTGACAACATAGAGAACAACTTCTGTGCTGACAATGCACCAGAACTGATTTCCTTGAATCGATCCGAGGAGGAATTTCAGCCAACTGTCTCTGCCTCTTGA 606 0.4653 MAAGVTVKSEVLESSPPEGVCSNTVENHLVQTNLSDGSPNKSVPASGLDAVIPSANQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEMKKIGTQTTLISPVPSRPSSPHGITNNIGSSQKSSICRLQAEFPIARRHSLQRFLEKRRDRLGSKTPYPSSSTTKVADNIENNFCADNAPELISLNRSEEEFQPTVSAS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1527 201 SMART tify_2 51 86 IPR010399 -
Gso15g1527 201 PANTHER DIVERGENT CCT MOTIF PROTEIN 41 179 - -
Gso15g1527 201 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 41 179 IPR040390 -
Gso15g1527 201 Pfam Jas motif 136 160 IPR018467 -
Gso15g1527 201 MobiDBLite consensus disorder prediction 102 121 - -
Gso15g1527 201 MobiDBLite consensus disorder prediction 1 22 - -
Gso15g1527 201 Pfam tify domain 53 85 IPR010399 -
Gso15g1527 201 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1527 Gso-Chr15 18596643 18600572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1527 56 167 Tify Gene Family AT5G20900 52.459 2.13e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso15g1527 tify 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1527 K13464 - gmx:100306524 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1527 15 18596643 18600572 Gso9g0651 9 8420673 8424661 GST
Gso13g0857 13 22895638 22898296 Gso15g1527 15 18596643 18600572 PCT
Gso17g0359 17 3243895 3246561 Gso15g1527 15 18596643 18600572 PCT
Gso15g1527 15 18596643 18600572 Gso13g0857 13 22895638 22898296 PCT
Gso15g1527 15 18596643 18600572 Gso17g0359 17 3243895 3246561 PCT