Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1524 ATGGCTGTTTTCTCTACCAAACAGCTGAGTACTTCAACTCTGACCACTACATTCATCATCTTCTTTGTTCGTTCTGAATTCACGGGACACGGTAGCCTGAGAGTTTCTCCTTCTGAATTCATAGGCTCGGTGACCACAGTAGGTGATGTTTTGCAAAACGTTACCTCCATTCTCAAGTCTGAGCTTAGAAGTGTCAAAAATGACTTTCATCTTCCTGATGCTGCCGTTTCCACGTGTCTTGATTTGTTAGACTTGTCAGCTGATGAACTCAGCTGGTCCATTTCCGCTGTTCAAAGTTCCCAAGGAAATGATAACAGTACAGGGAATCTAAGCTCTGATTTGAGGACATGGCTTAGTGCTGTACTTGCGAATACAGATACATGCATGGATGGTTTTGAAGGTACAAATGGGAATGTGAAGGGTTTAATATCCACTGTAATTGACCAAGCGAAGTGGTTGCTCCAAAAGTTACTGACCCTGGTGAAGCCTTATGTGAATGATTTCAGCAGTAGAAATAGTAGGGTAAAATTTCCTTCATGGATTGAAGCAGAGGATAAGATGTTGCTGCAGACAAATGGGGTGCCTGCAGATACTGTAGTTGCGGCTGATGGAACTGGGAATTTTACTAAGGTGATGGATGCTGTGCAAGCAGCACCTGTTTATAGCATGAGACGCTTTGTGATACACATAAAGAAGGGTGTTTACGAAGAGAACGTTGTGATTAACAAGAAGAAGTGGAACCTTGTGGTGATTGGTGAGGGTATGGATGCCACTGTTATCTCCGGTAATCTGAGTCGTAGTGAAAATTTGACCACATTCAAGACCGCTACCTTTGCTGTGAATGGCAGAGGATTCATAGCAAAAGGCATTACCTTCAGGAACACTGCAGGTCCCCAAAGAAACCAATCTGTTGCTCTAAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTTTGGCTACCAAGACAGCCTCTATGCCCACTCATTGCGCCAATTCTACAGAGAATGCAGAATCAGTGGCACAGTGGATTTCATATTCGGCCATGCCAATGCTGCAACATTTCAAGGTGAAATGTACCCCAATCGATCGTCCGGTTTCTCGATCCAATTCTGCAACATTTCAGCGGATTATGACCTTCTGCCATATCTCAACACCACTTCAACGTACCTCGGTAGACCCTGGAAGCCGTATTCCAGAACAATTTTCATGCAGTCCTACATCAGTGATGTGTTGAGTCCAGAAGGGTGGCTAGAGTGGAATGGAACATTGTATTTGGACACTCTGTTATATGCTGAGTACAAGAATTATGGACCAGGAGCTAGGCTTGATAATAGAGTCAAATGGCCAGGGTATCATGTGATGAATGATTCTAGAGAGGCTTATAATTTCACTGTGGCCAATCTCATTTTGGGGGAGCTATGGTTACCATCAACCGGGGTAACATTCACTCCTGGACTTTGA 1470 0.4401 MAVFSTKQLSTSTLTTTFIIFFVRSEFTGHGSLRVSPSEFIGSVTTVGDVLQNVTSILKSELRSVKNDFHLPDAAVSTCLDLLDLSADELSWSISAVQSSQGNDNSTGNLSSDLRTWLSAVLANTDTCMDGFEGTNGNVKGLISTVIDQAKWLLQKLLTLVKPYVNDFSSRNSRVKFPSWIEAEDKMLLQTNGVPADTVVAADGTGNFTKVMDAVQAAPVYSMRRFVIHIKKGVYEENVVINKKKWNLVVIGEGMDATVISGNLSRSENLTTFKTATFAVNGRGFIAKGITFRNTAGPQRNQSVALRSDSDLSVFYRCGIFGYQDSLYAHSLRQFYRECRISGTVDFIFGHANAATFQGEMYPNRSSGFSIQFCNISADYDLLPYLNTTSTYLGRPWKPYSRTIFMQSYISDVLSPEGWLEWNGTLYLDTLLYAEYKNYGPGARLDNRVKWPGYHVMNDSREAYNFTVANLILGELWLPSTGVTFTPGL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1524 489 Pfam Plant invertase/pectin methylesterase inhibitor 51 144 IPR006501 GO:0004857
Gso15g1524 489 Pfam Pectinesterase 197 358 IPR000070 GO:0030599|GO:0042545
Gso15g1524 489 SUPERFAMILY Pectin lyase-like 194 488 IPR011050 -
Gso15g1524 489 CDD PMEI-like_4 25 163 - -
Gso15g1524 489 Gene3D - 192 489 IPR012334 -
Gso15g1524 489 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 162 IPR035513 -
Gso15g1524 489 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 163 IPR035513 -
Gso15g1524 489 PANTHER PECTINESTERASE 353 488 - -
Gso15g1524 489 PANTHER PECTINESTERASE 35 358 - -
Gso15g1524 489 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 35 358 - -
Gso15g1524 489 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 353 488 - -
Gso15g1524 489 SMART PMEI_2 5 160 IPR006501 GO:0004857
Gso15g1524 489 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1524 Gso-Chr15 18412329 18415608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1524 22 489 Carbohydrate Esterase AT3G43270 54.509 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1524 K01051 - gmx:100810815 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1524 15 18412329 18415608 Gso9g0646 9 8240161 8243274 GST
Gso13g0850 13 22823978 22828350 Gso15g1524 15 18412329 18415608 PCT
Gso17g0368 17 3316774 3320393 Gso15g1524 15 18412329 18415608 PCT
Gso15g1524 15 18412329 18415608 Gso13g0850 13 22823978 22828350 PCT
Gso15g1524 15 18412329 18415608 Gso17g0368 17 3316774 3320393 PCT