Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1521 ATGGCGTTCCAGGATTTCGACATGATCACCGAGAGGCGGAGAAACGAGCAGAGGCTCAAGATGAAGAAGAAGATCCTCATCAGCGTCGTCTCCGCCGTCCTCCTCGCGTGCGTCGTAGGCGCTGCGGCATTCGTCGTTGTCCAAAGAACAGGCACTAATGCAAAGCACGCCACCCCAATGCCACAGAACACCGCCACGCCGCACGTGGATCAGAACTCCAGGATGGTGAAAATGATCTGTGGATCCGCAGAATACAAAGAAAAATGCGAAAGCACGCTCGAAGAAGCCCTAAAGAAGGACCCCAAATTGGCTCAACCCAAGGATCTTATCATGGTGTCAATGATTCTTGCGGAGAAGGAGGTTACCAATGCCTTCGATGGAACTGCAAAGATGATGGGCAATGCGTCCGAGGAAGAGAAGGGTGCGTACGAGGATTGCAAGGGTTTGTTCAAGGACGCCAAGGAAGAGCTTGAGCTGTCGATCACCGAGGTTGGCGACAACGACGCGGACAAGCTCTCCACAAAGGGTGCTGAACTGAACAACTGGCTCAGTGCGGTTATGTCTTACCAACAAACCTGCATTGATGGTTTCCCCGAAGGGAAGATCAAGGATGATTTCACCAGCATGTTTACTAACTCTAGGGAGCTTGTGAGCAATTCTCTTGCGGTTGTTTCGCAGTTTTCTTCCTTCTTTTCGATCTTCCAAGGCGCCGGGGGGATTCATCTTCCTTGGGAGACTACCAGTGATGATGCACTGGCACCTACTGCTTCTGGTTCTGCTTCTGGTGCCGGTGCTGGTGCTGGTGCTGGGTCTGTGTTCGGTTCTGATCCCTCTTCTTTTGGTCTTGGTTATGCTTCTGCTCCTGCTGGTGGTGTTGCTCTTGCTCCTGGTGTTGCTCCTGCTCCCGGTGCTGCCCCTGGCCCAGTTCCTTCTTTGCCTGCTGGTTCAATTCCTGCATGGACGGGCTCAGTTCCTGTTTGGGCCGGCCCATCCGAGTTCTTGGGATCAAATGAAAAGCCCACACCTAATGTTACCGTGGCCCAAGATGGCAGCGGAAACTTCAAAACCATCTCTGAAGCTTTGGCTGCCATCCCACCACAATACGACGGAAGGTACGTGGTTTATGTCAAAGAAGGAGTGTACGATGAGACCGTGACAGTGACAAAGAAAATGGTAAATTTAACCATGTACGGTGACGGACAGCAAAAGAGTATCGTCACTGGAAACAAAAATTTCGTGGATGGAGTCAGGACCTTCCAAACTGCATCATTTGTTGTACTTGGAGAGGGATTCTTGGGGAAAGACATGGGATTCAGAAACACAGCCGGTGCAGAGAAGCACCAAGCAGTGGCCGCAAGAGTGCAAGCCGACCGAGCCATATTCTTCAACTGCGCCTTCGAGGGCTACCAAGACACTCTCTACGCCCAAACCCACAGACAATTCTACCGCGACTGCTACATCTCTGGAACAATCGACTTCATCTTCGGCGACGCCTCCGCGGTGTTCCAGAACTGCACCATGGTGGTAAGAAAGCCACTGGAGAACCAGCAGAACATCGTGACAGCACAAGGGAGGCTCGACAAGCAGGAGAACACCGGCTTCGTCCTCCAGAAATGCGTGATCAAGGCCGACACCGACTTGGTACCCCTCAAAGACACAATCAAGAACTACCTCGGAAGGCCGTGGAAGGAGTATTCAAGAACCATCATCATGGAGACTCAGATTGATGACCTAATTCACCCTGATGGGTTTCTTCCTTGGGAAGGGAACTTTGCCCTAAGCACACTTTACTATGGTGAGTACAACAACAATGGGGCTGGTTCTAGCACCACTGCTAGGGTTAATTGGCCTGGCCGCAAAGTCATCAATAGGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCTCAACTAGGCCTGTACAGTTAA 1965 0.517 MAFQDFDMITERRRNEQRLKMKKKILISVVSAVLLACVVGAAAFVVVQRTGTNAKHATPMPQNTATPHVDQNSRMVKMICGSAEYKEKCESTLEEALKKDPKLAQPKDLIMVSMILAEKEVTNAFDGTAKMMGNASEEEKGAYEDCKGLFKDAKEELELSITEVGDNDADKLSTKGAELNNWLSAVMSYQQTCIDGFPEGKIKDDFTSMFTNSRELVSNSLAVVSQFSSFFSIFQGAGGIHLPWETTSDDALAPTASGSASGAGAGAGAGSVFGSDPSSFGLGYASAPAGGVALAPGVAPAPGAAPGPVPSLPAGSIPAWTGSVPVWAGPSEFLGSNEKPTPNVTVAQDGSGNFKTISEALAAIPPQYDGRYVVYVKEGVYDETVTVTKKMVNLTMYGDGQQKSIVTGNKNFVDGVRTFQTASFVVLGEGFLGKDMGFRNTAGAEKHQAVAARVQADRAIFFNCAFEGYQDTLYAQTHRQFYRDCYISGTIDFIFGDASAVFQNCTMVVRKPLENQQNIVTAQGRLDKQENTGFVLQKCVIKADTDLVPLKDTIKNYLGRPWKEYSRTIIMETQIDDLIHPDGFLPWEGNFALSTLYYGEYNNNGAGSSTTARVNWPGRKVINRDEATRYTVEAFLQGTWINGTGVPAQLGLYS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1521 654 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 226 IPR006501 GO:0004857
Gso15g1521 654 SMART PMEI_2 71 223 IPR006501 GO:0004857
Gso15g1521 654 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 652 - -
Gso15g1521 654 Gene3D - 337 652 IPR012334 -
Gso15g1521 654 PANTHER PECTINESTERASE 14 652 - -
Gso15g1521 654 CDD PMEI-like_3 79 224 - -
Gso15g1521 654 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 228 IPR035513 -
Gso15g1521 654 ProSitePatterns Pectinesterase signature 2. 487 496 IPR033131 -
Gso15g1521 654 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 227 IPR035513 -
Gso15g1521 654 SUPERFAMILY Pectin lyase-like 340 647 IPR011050 -
Gso15g1521 654 Pfam Pectinesterase 343 638 IPR000070 GO:0030599|GO:0042545
Gso15g1521 654 Pfam Plant invertase/pectin methylesterase inhibitor 76 222 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1521 Gso-Chr15 18336772 18339339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1521 342 653 Carbohydrate Esterase AT2G26450 63.898 4.37e-147 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1521 - - gmx:100807628 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1521 15 18336772 18339339 Gso9g0643 9 8176275 8179447 GST
Gso17g0369 17 3326772 3329393 Gso15g1521 15 18336772 18339339 PCT
Gso15g1521 15 18336772 18339339 Gso17g0369 17 3326772 3329393 PCT