Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1517 ATGCTACCATTATTCTCTGTTAACTCAGTAATGGCTTCTACTTCTGATTCCGTTCCTTCTTTCACCGCTGTCGGATACACACGCACTGACGCTACTTCTCCACCAAACAACCACCACCTATCCTCGCTATCACACGTCACTCTCATTACCGTAACGGTCCTCGCCGTCGCCGTTACGGTTTCCTTAGCCTTGTACTTCCTTCTCCGCTACCGTAACAGTAACCGTTTTCGTTTCCTCCGTCGAGTCTCTCCGTCGACATCCGCCGCAGCGTTCTCCTCCTCCGGCAATCGGATATTGCCGGAAACCACTTCTTCGTCTTCCGTTTTCGACTTGCTCCCGACGTTCACCTTCTCCTCCATCACGCGCCGCGCCGACGCCGCTGGCGGCGGCGACTGCGCCGTTTGTTTGTCGAAGTTCGAGCAGAACGACCTTCTCCGCTTGCTACCTCTCTGCTGCCACGCATTTCACGCGGAATGCATCGACACGTGGCTTCGGTCGAAGCTCACGTGTCCGCTCTGCCGATCCGCTGTCGCCGCGTCTGAATCCGACCTCGCGATGGTTTTCCGGTCGTCGTCCGTCGCTGGCAGCGACAGCTTCCGGCTGGAGATAGGGAACATTAGTAGCCGCCGCGAAGGAGATATCACCGCCGTTGCCGGAGAAACGCGCGGAAGGTCATATTCCGTTGGCGCGTTCGAGTATCTCATTGACGAGGAAGCTGAGGTTGAGGTCGAGGTTGCGTTCGGTTTAGCTGACCGGAGAATCGTTTCCGGCGAGAAAAACGACGGTGCTCCGATAGTGGCTCCGGCGGATTCTCTAGCTGGTGAGGTAGGGCGTGGTGGTGGAAGTAGAAATGGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGGTGTCGTTTCGGAGTTCTGGAAGCTTCTTCACTGGGAGCAGTCGCCGAAGCGACGTCGTTTTGGGAGGAGATTACGATGTAGAAGCGAACCGTTTCGGGGACGAAATCGGGGAAATGTTCCGATGGCTCTCAGGGGTTTGA 1038 0.5588 MLPLFSVNSVMASTSDSVPSFTAVGYTRTDATSPPNNHHLSSLSHVTLITVTVLAVAVTVSLALYFLLRYRNSNRFRFLRRVSPSTSAAAFSSSGNRILPETTSSSSVFDLLPTFTFSSITRRADAAGGGDCAVCLSKFEQNDLLRLLPLCCHAFHAECIDTWLRSKLTCPLCRSAVAASESDLAMVFRSSSVAGSDSFRLEIGNISSRREGDITAVAGETRGRSYSVGAFEYLIDEEAEVEVEVAFGLADRRIVSGEKNDGAPIVAPADSLAGEVGRGGGSRNGNGWLKDYVDRLSNTVSFRSSGSFFTGSSRRSDVVLGGDYDVEANRFGDEIGEMFRWLSGV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1517 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 333 - -
Gso15g1517 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gso15g1517 345 SUPERFAMILY RING/U-box 125 179 - -
Gso15g1517 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 333 - -
Gso15g1517 345 SMART ring_2 132 173 IPR001841 -
Gso15g1517 345 Pfam Ring finger domain 131 174 IPR001841 -
Gso15g1517 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Gso15g1517 345 CDD RING-H2_PA-TM-RING 131 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1517 Gso-Chr15 18239472 18241042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1517 106 246 C3H Transcription Factor Family AT2G18650 31.683 2.82e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1517 K10663 - gmx:100804962 612.838