Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1515 ATGTTGAACCCTGAGCCGCCACCTCCGCCGACGATGGTTCCGCCGGCGACGCCGCTCAACCGCGAAACGACGTCGCTGAGGAAGAGGAACAGAATCCGAACTCCGGTTCCTCCTTTCGCGGATGTCGTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTCAGGGGCACCACGAAATCAAACGCGATCGCCGTGGAGCAATACGACGCCGTTTCCGCTTCCGTTTCCAACCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGACGTGCGCATCCTCAACTTTACTCCGCCAAACACGTCCTTTGGAAAACGCCGCAAGAAATCATCATCGAAAGGAGAGTGCTCCAGCACCGCACCGTTCCTCTGCGAAATCTGCACCGAAACGAAAACCGACAGAGACTCCTTCTCCATCACCGGATGCCGCCACGTGTACTGCAACTCCTGCGTCGCGCAGTACGTCGAATCGAAGCTCGAGGATAACGTCGTCAACATCCCCTGCCCTGTGCCGGGATGCAGGGGATTACTGGAGGCTGATTATTGCCGTGAAATTCTCTCGCCTCGCGTCTTCGATCGCTGGGGGAATGCACTTTGCGAGGCTGTGATTGATGCTGAGGAGAAATTCTACTGTCCCTTTGCGGATTGTTCTGCTATGTTGATTAGGGCAAGTGAAGATGCTGACATTAGGGAATGTGAGTGTCCAAACTGTAGGAGGCTGTTCTGCGCCCTGTGTAGGGTGCCCTGGCACGAAAACATACCCTGCGAGGAGTTTCAGAAGCTCAACGCGGAAGAGAGGGAGAGGGAGGATATCATGCTCATGAGCCTCGCTAAGCAAATGCAGTGGAAGAGGTGCCCCCACTGTAGATTCTACGTCGCCAAATCCGAAGGCTGCATGTACATGAGATGCAGGTGTGGAAACTCCTTCTGTTACAAATGTGGAGCCCCTATCTTAACCGGGTCCCATAGTTGCAGCTATTGTTTTCGTTAA 1002 0.5479 MLNPEPPPPPTMVPPATPLNRETTSLRKRNRIRTPVPPFADVVDVDSSFFTTPISFRGTTKSNAIAVEQYDAVSASVSNPVHVINLSDTEDDDDVRILNFTPPNTSFGKRRKKSSSKGECSSTAPFLCEICTETKTDRDSFSITGCRHVYCNSCVAQYVESKLEDNVVNIPCPVPGCRGLLEADYCREILSPRVFDRWGNALCEAVIDAEEKFYCPFADCSAMLIRASEDADIRECECPNCRRLFCALCRVPWHENIPCEEFQKLNAEEREREDIMLMSLAKQMQWKRCPHCRFYVAKSEGCMYMRCRCGNSFCYKCGAPILTGSHSCSYCFR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1515 333 SMART ibrneu5 196 259 IPR002867 -
Gso15g1515 333 SMART ibrneu5 269 331 IPR002867 -
Gso15g1515 333 MobiDBLite consensus disorder prediction 1 16 - -
Gso15g1515 333 SUPERFAMILY RING/U-box 204 264 - -
Gso15g1515 333 ProSiteProfiles TRIAD supradomain profile. 124 333 IPR044066 -
Gso15g1515 333 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 59 331 - -
Gso15g1515 333 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 331 IPR031127 GO:0004842|GO:0016567
Gso15g1515 333 Gene3D - 257 333 - -
Gso15g1515 333 Pfam IBR domain, a half RING-finger domain 204 259 IPR002867 -
Gso15g1515 333 Pfam IBR domain, a half RING-finger domain 280 325 IPR002867 -
Gso15g1515 333 MobiDBLite consensus disorder prediction 1 32 - -
Gso15g1515 333 Pfam Zinc finger, C3HC4 type (RING finger) 128 173 IPR018957 GO:0046872
Gso15g1515 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 209 IPR013083 -
Gso15g1515 333 SUPERFAMILY RING/U-box 125 208 - -
Gso15g1515 333 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Gso15g1515 333 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
Gso15g1515 333 SUPERFAMILY RING/U-box 270 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1515 Gso-Chr15 18171706 18174327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1515 128 320 C3H Transcription Factor Family AT2G19610 30.918 3.07e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1515 K11975 - gmx:100803898 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1515 15 18171706 18174327 Gso9g0630 9 7835900 7838615 GST