Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1492 ATGAAGGCTCCTCCCAGTGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCCAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCACGCTGATCCTGAAACTGATGAAGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACCCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCTCCTCTGGATTTTTCTATGCAACCTCCAGCTCAGGAGATTGTAGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTACTGACGACTGGTTGGAGTGTCTTTGTTAGCACTAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATTAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGGGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGTATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATCCCATCGGCCAAGTATAATAAGGCCTTGTACAATCACGCTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGGGTACGCAGATATATGGGTACAATCACTGGTATCACTGATGTGGATCCTGTCCGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGACAGCTGGTGAGCGCCCGAGCAGGGTTTCAATTTGGGATATTGAACCAGTGGTGACTCCTTTCTATATTTGTCCTCCTCCATTTTTCAGGCCCAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCAATGCCTTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCTAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTTCACCAAATCTTCAATTTAACAAACCTAATTTAGCAAACCAAGTCAACCAATTGCAACAATCCCCAACGTCATGGCCTCCGCAGCAGCAGCAGCAACAGCAGAAGCTGCAGTCAATGTTGCAAACACCCTTAAACCCACTCCAGCAGCAGCAGCAACAGAGGCAACAGCAGCTGCCTGTACCACAAAACCTGTCACAACCACAGCAGCAACAGCCCCAAATGCCTCAACAGAGAGCACAACAGCCACAACAACAGCAACAGCAGTCGTGTCAACAGACCATCATGAGTAACGGGACAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAACAACCAGTAACATACTCACAACTTCAGCAACAACAATTACTCTCAGGAAGTATCCCACCCCAACAAAGTTTTCAATCACCCAATAAGAATGCATTGTTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAGCAGCAGACACAGTTGCAATCATCTCCGTTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCATCACAGCAACCACAAATGACTCAAATGTGTCAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAGTTGCTACAAAAATTGCAGCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACATCAACAAAATACTCATCAACAAAACCAGCAATTGCCGCAGCTGCCTCTATCACAGGGTCATCAGCCTCAACAGCTTGGAAACAATGCTTTCTCAATGGAGAAGCTTCTCAATGGAAACAACTACTCTACTTCATCTCTGATGCAAACACAGCAGCTTTCTGTGAACCAACCCCATAATACACAGAAATCACTGACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAATTGCCAGATATCTCCAAATCTGATGAAAAGAAATCAACATGTACCGGCAACATTAGGAGGACCTTCAGTACTTGAACCCACCAATCATCTGATGCAGGGACTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTACCTAGTGTAAGAGGAACTGATCAGCTGAAGTTCAAAGGGACAGTTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCAAACCCAAGAAACAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTTCTCTCAAGAGGGTATGATTCTCAAAAGGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCTCTTAGTCCACAGCCGTTTGGGGTGCCAGGCATTCCTTTTAAGCCTGGATGCTCAAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGGTATGATGAACTCCGGCATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTAGTATATGTCGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGAAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGAACAGATAACGGCAATGCATGGAGGGGACAGTATGAGGATAACTCGGCAGCCTCATTTAATCGATAA 3369 0.4423 MKAPPSGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPSAKYNKALYNHASLGMRFRMMFETEESGVRRYMGTITGITDVDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNALHGNLTTDDPSKLLSFQAPVLSSPNLQFNKPNLANQVNQLQQSPTSWPPQQQQQQQKLQSMLQTPLNPLQQQQQQRQQQLPVPQNLSQPQQQQPQMPQQRAQQPQQQQQQSCQQTIMSNGTVASNQIPNQCVQQPVTYSQLQQQQLLSGSIPPQQSFQSPNKNALLMTSLPQDSQFQQQIDQQASLLQRQQQQQTQLQSSPLQLLQQSLSQRASQQPQMTQMCQQNSSEQQPQLQLLQKLQQQQQQQQQQQQQQLLSTSSPLLQSQLLHQQNTHQQNQQLPQLPLSQGHQPQQLGNNAFSMEKLLNGNNYSTSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPNLMKRNQHVPATLGGPSVLEPTNHLMQGLHSKSEMQIKHELPSVRGTDQLKFKGTVADQMEASSGTSYCIDPNNIHQNFPLPNFCMDGDVQSNPRNNLPFASNLDGLTPDTFLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAALSPQPFGVPGIPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQKMSLDGDLGHVPVPNQACSGTDNGNAWRGQYEDNSAASFNR* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1492 1122 Coils Coil 678 699 - -
Gso15g1492 1122 Pfam AUX/IAA family 992 1081 IPR033389 -
Gso15g1492 1122 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gso15g1492 1122 Gene3D - 289 360 - -
Gso15g1492 1122 MobiDBLite consensus disorder prediction 484 558 - -
Gso15g1492 1122 MobiDBLite consensus disorder prediction 1100 1122 - -
Gso15g1492 1122 Gene3D - 990 1084 - -
Gso15g1492 1122 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1110 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso15g1492 1122 SUPERFAMILY CAD & PB1 domains 1009 1073 - -
Gso15g1492 1122 CDD B3_DNA 125 217 IPR003340 GO:0003677
Gso15g1492 1122 Gene3D - 123 227 IPR015300 -
Gso15g1492 1122 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gso15g1492 1122 SMART B3_2 126 228 IPR003340 GO:0003677
Gso15g1492 1122 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso15g1492 1122 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso15g1492 1122 MobiDBLite consensus disorder prediction 767 808 - -
Gso15g1492 1122 PANTHER AUXIN RESPONSE FACTOR 19 1 1110 - -
Gso15g1492 1122 ProSiteProfiles PB1 domain profile. 995 1088 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1492 Gso-Chr15 17533345 17541419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1492 1 488 B3 DNA Binding Superfamily AT1G19220 82.172 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso15g1492 AUX_IAA 2.8e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1492 K14486 - gmx:100815277 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1492 15 17533345 17541419 Gso9g0610 9 7356063 7364079 GST
Gso13g0824 13 22536567 22544034 Gso15g1492 15 17533345 17541419 PCT
Gso17g0388 17 3565215 3573241 Gso15g1492 15 17533345 17541419 PCT
Gso15g1492 15 17533345 17541419 Gso13g0824 13 22536567 22544034 PCT
Gso15g1492 15 17533345 17541419 Gso17g0388 17 3565215 3573241 PCT